Laura Hughes

`getPrevalence(pangolin_lineage = "P.1", cumulative=TRUE)` returns `value.global_prevalence` `value.total_count` `value.lineage_count` `value.first_detected` `value.last_detected ` - -`value.` seems unneccesary

lineages are case sensitive in `other_exclude`

1

plotAllLineagesByLocation("United States", other_threshold = 0.05, nday_threshold = 5, ndays = 365, other_exclude = "A.1")

@gkarthik : maybe add to API the total worldwide instances of S:N501Y and percentage of all sequences for a given mutation? could be useful in cases where there are multiple...

When you call functions like `getAdmn0()` or `getAdmn2ByCountry()` the function is slooooooooow since it has to make a bunch of calls and returns a lot of data. Would be nice...

Embedded pages are broken

4

http://localhost:8080/genomics/embed does not load or change toggle buttons correctly. CSS is also misformed. See production for expected behavior.

After the Vue3 migration, please update the documentation on the README.md with new instructions on the steps required to build the app locally. If there's other pertinent documentation about any...

Regex replace all PANGO with Pango. Can add in with the Vue3 migration -- just don't want to introduce merge conflicts by changing the main branch now.

Display lineage ancestry below lineage name

1

With all the evolution within Omicron, and especially all the recombinants, I'm finding it hard to keep track of what particular lineages are, for instance: "what is CJ.1?". For tiny...

Currently, the Situation Report Component relies on front-end filtering to fetch the data for all time, and then filter to the date range selected. With the added `min_date` and `max_date`...

Currently, the Location Component relies on front-end filtering to fetch the data for all time, and then filter to the date range selected. With the added `min_date` and `max_date` parameters...