bUnwarpJ
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fiji
ImageJ/Fiji plugin for consistent elastic registration of 2D images
I have observed a seemingly erratic behavior when performing a registration with `bUwarpJ`: Example files: [`source.tif`](https://olucdenver-my.sharepoint.com/:i:/g/personal/christian_rickert_cuanschutz_edu/EX2au1OrZ_pNmEO8qsxqMAQBDrbdXAdfR4kQzLFrXzpKAA) [`target.tif`](https://olucdenver-my.sharepoint.com/:i:/g/personal/christian_rickert_cuanschutz_edu/EXdQpv15hp5MnlmMn8XU-acBMwVQYwYQTHiGhNOOzn7mzg) Notice that all registrations without prior MOPS correspondence extraction fail, i.e. are significantly...
There is a bug in both functions used to calculate the transformation - within the while loop (which checks state), there is a switch-case statement, which checks the value of...
I have notice an "odd" behavior when using bUnwarpJ: the output pixel value range can exceed the input pixel value range. Log window output: >Target Image >____Minimum: 0, >____Maximum: 255...
Hi, I was trying to run this plugin in command line using: ```sh bUnwarpJ_ -align target.jpg NULL source.jpg NULL 0 2 0 0.1 0.1 0 0 output.tif output_2.tif -landmarks 1...
Hi, is it possible to increase the final deformation details beyond the current maximum 'super fine' (16x16)? Long computation times would be acceptable for me. Many Thanks, porelius
When using multipoints to set landmarks (defining, for example, 10 points in each image) and running bUnwarpJ, an additional 40 landmarks are created on top of each other in the...
Dear Ignacio, first of all, thanks for this useful plugin! I am rather new to image analysis, since I work on AFM rather then on optical microscopy. Actually I would...
Currently, lines 3077-3078 and presumably lines 3158-3159 for colour images (https://github.com/fiji/bUnwarpJ/blame/master/src/main/java/bunwarpj/MiscTools.java#L3077-L3078; https://github.com/fiji/bUnwarpJ/blame/master/src/main/java/bunwarpj/MiscTools.java#L3158-L3159) are sometimes resulting in a negative image height for the last thread so that a NegativeArraySizeException is thrown...
