Foivos Gypas

icon indicating a website link https://www.gypas.com/

icon company Bioinformatics Software Engineer at Novartis Institutes for BioMedical Research (NIBR) icon location Basel icon location Bioinformatics Software Engineer @Novartis

Results 35 comments of Foivos Gypas

CWL export: 'Job' object has no attribute 'conda_env_file'

I am also running into this. snakemake version: 7.32.3

Update igv js version

Great. Thank you.

Code 400 not recognized

Sorry for my late reply. I have not moved to version 8 yet. Will try to work on it.

Upgrade to Snakemake version 9

Hi @ninsch3000 Thank very much for looking into it. I made an update to use the general executor plugin and updated the corresponding profiles. Can you please give it a...

Annotation used for DepMap 24Q2 release

It also seems that you are working on a PR to use ensembl gene ids which would be ideal. https://github.com/broadinstitute/depmap_omics/pull/220 Any feedback would be appreciated.