integrate proDA

Open wolski opened this issue 4 years ago • 2 comments

Add proDA as a further modeling option in prolfqua.

Oct 01 '21 12:10 wolski

In proDA you specify the contrasts differently than in prolfqua, But I think I can work around it using run_wald_parameter_test (currently private function). seems that the second argument it takes is:

                 (Intercept) Treatmentplacebo
Treatment16mg              1                0
Treatmentplacebo           1                1
16mgvsPlacebo              0               -1

Nov 11 '21 13:11 wolski

It seems that proDA now has a contrast interface similar to that of prolfqua https://bioconductor.org/packages/release/bioc/vignettes/proDA/inst/doc/Introduction.html

Dec 23 '23 14:12 wolski