fernanarr

Hi @iiSeymour, thanks for your reply. We have an Nvidia basic GPU with only 2GB, but this week we will install in our device an RTX3070TI model. Then I'll try...

Hello again @iiSeymour Now, with the new RTX 3070 TI, Bonito is working after solving a few problems with pytorch and CUDA versions. We've tried to make a first run...

@iiSeymour thanks a lot for yor quick reply. My bad with the` .fastq `output, I've copied the wrong command in my post. I'm using `.bam` I've checked that there is...

Hi @DjampaKozlowski Thanks for your help. I've changed the argument position and referenced just the data folder after changing to bonito directory to execute the command, and now seems to...

Great! With an Nvidia GTX 3070TI I've tried a batchsize of 1390 without any trouble. Just in case it helps you.

Hi! We are trying to use it because we've read your article and your tool's features seems to suit to our needings and our data volume. We haven't tried bcftools...

great @lindenb! It worked. Thanks a lot for your help and for taking time to develop this tool. Regards

Same problem for me. I've also tried executing porechop from its directory with `python3 porechop-runner.py` with the same result. -o option finds custom barcodes, but -b can't find none of...