Fernando J. Chaure

Different groups == Clusters? I don't know if I'm understanding correctly, are you saying that wave_clus give you 13 clusters but you can see 32 using tsne? tsne is just...

About the tsne, I can't help you with the details of the implementation. But if you have less that 500 different spikes, I'm not sure that wave_clus can find real...

1. This is a acceptable alternative, you could accept some clusters and the merge the others in a big multinuit class. I don't understand what do you mean with "average...

You said that your sampling rate was 20 KHz therefore the waveform will contain 3.2ms

There are multiple steps in the preprocessing: filtering (one filter for deteccion and other for sorting [the spikes saved on the file]) and alignment using interpolation.

the spikes will have par.w_pre+par.w_post samples (64 by default) with a sampling rate of 20 kHz that equals to 3.2 ms

the mean (sample by sample) of all the spikes for that class

On both cases, you need a file with the raw data per channel. The detection for single-channel is calling Get_spikes for each channel, and for polytrodes the instructions are [here](https://github.com/csn-le/wave_clus/wiki/Polytrodes)....

Hi, I'm not able to support new macOS (I would need access to that OS and SPC specifically in that systems), but now the SPC code is available [here](https://github.com/eytandomany/SPC). If...

You are right, we don't update the cluster 0 after a reject. But any other action that plot all the clusters again will plot correctly the new cluster 0 (...