Flye
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assembly_info.txt for edge not for contig?
I would like to have an output file like assembly_info.txt but for edge sequences not for contigs. Is there an such output file from Flye? Or, do I have to make one?
In that assembly_info.txt, I need the following columns:
- Edge id
- Length
- Coverage
- Multiplicity (based on coverage)
In other issue, I also asked the following question:
Can you tell us more about how you guess multiplicity from the coverage?
You have an answer to my question at #643 (comment)
"... multiplicity column indeed does not make much sense - it's basically contig coverage divided by the median dataset coverage. ..."
How do I get the median dataset coverage? Or, how can I compute it from a long-read dataset?
Thank you for the great assembly software.