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assembly_info.txt for edge not for contig?

Open goshng opened this issue 4 months ago • 2 comments

I would like to have an output file like assembly_info.txt but for edge sequences not for contigs. Is there an such output file from Flye? Or, do I have to make one?

In that assembly_info.txt, I need the following columns:

  • Edge id
  • Length
  • Coverage
  • Multiplicity (based on coverage)

In other issue, I also asked the following question:

Can you tell us more about how you guess multiplicity from the coverage?

You have an answer to my question at #643 (comment)

"... multiplicity column indeed does not make much sense - it's basically contig coverage divided by the median dataset coverage. ..."

How do I get the median dataset coverage? Or, how can I compute it from a long-read dataset?

Thank you for the great assembly software.

goshng avatar Oct 12 '24 08:10 goshng