Marcus Fedarko

Thank you! I downloaded the fixes and tried running `Gfa.from_file()` on the big > 3 GB GFA file (using `ignore_sequences=True`). After a few minutes, the `from_file()` operation is unfortunately still...

One relatively straightforward thing that might help with this (for the QIIME 2 version, at least) is adding an extra command or parameter\* that disables the construction of the biplot....

Fair, thanks. I didn't really need a biplot (I just wanted the differentials), but those options could be useful if people start needing biplots from that sort of data. You're...

Adding reference to @mortonjt's comment [here](https://github.com/biocore/songbird/pull/106#discussion_r368206088), which shows some examples of this in the codebase.

## re: integrating this stuff into qurro @mortonjt This does seem like it overlaps a decent amount with Qurro, but integrating it into that might take a lot of work....

Thank you for raising this! Just to clarify, is the Python side of Qurro crashing, or is it able to successfully create a visualization (which then crashes in the browser)?...

That's exciting! @qiyunzhu, are you thinking of adding some sort of automatic integration (e.g. Travis) for this? It looks like the files in `bt2sho` come out to about 321 MB...

In addition to adding this as an option, I guess, it would be best to add some simple code that attempts it automatically. For example, if all nodes in a...

We can formalize this and make it less brittle as follows. Given a graph where nodes have reverse-complements (i.e. not MetaCarvel GML), consider all (weakly connected) components. Two components C1...

One thing to keep in mind for this is ensuring that the random node colors are visible against the chosen graph background color, and against the background colors of any...