dustmasker dependency

[puethe]

Hi, it seems that there's an implicit dependency on "dustmasker" for part of the functionality, but this isn't mentioned in the README and also doesn't get installed with install_krakenuniq.sh. This is particularly an issue when installing the software via conda. Would be great if this could be looked at! Many thanks in advance, Christoph

[drpatelh]

After fishing around the interwebnet it appears that the dustmasker executable is now a part of the BLAST+ suite of tools: https://github.com/tseemann/prokka/issues/256

Creating an environment.yml with the contents below provides dustmasker in the environment:

# You can use this file to create a conda environment:
#   conda env create -f environment.yml
name: krakenuniq-0.5.8
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - bioconda::krakenuniq=0.5.8
  - bioconda::blast=2.9.0