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Mapping errors when downloading files

Open jalalsiddiqui opened this issue 11 months ago • 0 comments

I was downloading sequences from viral-neighbors and get errors like below: Downloading sequences 90001 to 100000 of 188678 ...https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=HM104174 HM104174: 239365 [/tmp/*]

No mapping for sequence HM104174 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU258880 KU258880: 239365 [/tmp/*]

No mapping for sequence KU258880 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU258879 KU258879: 239365 [/tmp/*]

No mapping for sequence KU258879 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU258878 KU258878: 239365 [/tmp/*]

No mapping for sequence KU258878 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU258877 KU258877: 239365 [/tmp/*]

No mapping for sequence KU258877 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU258876 KU258876: 239365 [/tmp/*]

No mapping for sequence KU258876 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU258875 KU258875: 239365 [/tmp/*]

No mapping for sequence KU258875 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU258874 KU258874: 239365 [/tmp/*

No mapping for sequence KU258874 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU258873 KU258873: 239365 [/tmp/*]

No mapping for sequence KU258873 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU258872 KU258872: 239365 [/tmp/*]

No mapping for sequence KU258872 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU258871 KU258871: 239365 [/tmp/*]

No mapping for sequence KU258871 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU258870 KU258870: 239365 [/tmp/*]

No mapping for sequence KU258870 - not writing it to it's own file! https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=nuccore&db=taxonomy&id=KU179192 KU179192: 239365 [/tmp/*]

No mapping for sequence KU179192 - not writing it to it's own file! done

Does that mean that those sequences are not written? I think the taxa IDs are wrong and we can fix that manually.

Any help will be appreciated.

Thanks.

jalalsiddiqui avatar Mar 19 '24 22:03 jalalsiddiqui