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error building kraken report

Open CuypersBart opened this issue 2 years ago • 0 comments

Hi,

I tried KrakenUniq with the prebuilt index 'EuPathDB48' from https://benlangmead.github.io/aws-indexes/k2.

Krakenuniq itself runs fine. However, both krakenuniq-translate & krakenuniq-report give similar errors for every line.

krakenuniq-report: Use of uninitialized value $taxid in hash element at /data/antwerpen/grp/abiodatamining/tools/Miniconda/envs/krakenuniq/bin/krakenuniq-report line 121, <> line 465160. Use of uninitialized value $taxid in hash element at /data/antwerpen/grp/abiodatamining/tools/Miniconda/envs/krakenuniq/bin/krakenuniq-report line 121, <> line 465161

krakenuniq-translate:

Use of uninitialized value $taxid in exists at /data/antwerpen/grp/abiodatamining/tools/Miniconda/envs/krakenuniq/bin/krakenuniq-translate line 91, <> line 189978. Use of uninitialized value $taxid in hash element at /data/antwerpen/grp/abiodatamining/tools/Miniconda/envs/krakenuniq/bin/krakenuniq-translate line 112, <> line 189978. Use of uninitialized value $seqid in concatenation (.) or string at /data/antwerpen/grp/abiodatamining/tools/Miniconda/envs/krakenuniq/bin/krakenuniq-translate line 86, <> line 189978.

Use of uninitialized value $taxid in exists at /data/antwerpen/grp/abiodatamining/tools/Miniconda/envs/krakenuniq/bin/krakenuniq-translate line 91, <> line 190030. Use of uninitialized value $taxid in hash element at /data/antwerpen/grp/abiodatamining/tools/Miniconda/envs/krakenuniq/bin/krakenuniq-translate line 112, <> line 190030. Use of uninitialized value $seqid in concatenation (.) or string at /data/antwerpen/grp/abiodatamining/tools/Miniconda/envs/krakenuniq/bin/krakenuniq-translate line 86, <> line 190030.

Do you know what could be the issue?

CuypersBart avatar Jul 20 '22 14:07 CuypersBart