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Running with "general" db requires vog.annotations.tsv which is absent from hmm/

Open lukesarre opened this issue 1 year ago • 0 comments

Hi, there. Thank you for developing this wonderful tool.

I was trying to get Viral Recall up and running using the general VOG database, but ran into the error:

Traceback (most recent call last):
  File "viralrecall.py", line 733, in <module>
    status = main()
  File "viralrecall.py", line 728, in main
    run_program(input, project, database, window, phagesize, minscore, minhit, evalue, cpus, plotflag, redo, flanking, batch, 
summary_file, contiglevel)
  File "viralrecall.py", line 383, in run_program
    vdesc = get_annot(database)
  File "viralrecall.py", line 41, in get_annot
    input = open("hmm/vog.annotations.tsv", "r")
FileNotFoundError: [Errno 2] No such file or directory: 'hmm/vog.annotations.tsv'

As I understand, this should be present in the hmm/ folder from Zenodo as per the README, but it isn't there. Can you direct me where to find it, or help find an alternative?

Thank you for your help,

Regards,

Luke

lukesarre avatar Nov 30 '23 16:11 lukesarre