Francesco Asnicar

Thanks Alex for this PR. I tried running the new version of `phylophlan_setup_database.py` adding the `xmlschema` package (version 1.10.0 from conda-forge) to my conda env. However, I'm getting the following...

I have the 3.6.15 from conda-forge (`hb7a2778_0_cpython`).

Hi, can you please provide the command line and the log with the `--verbose` parameter (if you saved it)? Many thanks, Francesco

Hi @skye-zhai, thanks for reporting this. Have you tried running the command in the error? ~~~ mash dist -p 1 phylophlan_databases/SGB.Jan19/16015.msh phylophlan_metagenomic_sketches/phylophlan_metagenomic_paste_1.msh ~~~ Many thanks, Francesco

Hello Jaime, Thanks for reporting this. I checked the SGB table of the Dec20 release and the 66244 is not present. So I'm guessing there is an error in the...

Thank you Jamie, we'll investigate both releases and fix them. In the meantime, I'm going to remove them from ` phylophlan_metagenomic` so others won't suffer from this issue. Many thanks,...

Hi Lisa, The values reflect the different positions over the total number of positions that can be compared. This means that gaps, for instance, won't be considered in the mutation...

Hi, thanks for reporting this. So, the first command you posted is not helpful in this case, as that is a `phylophlan` command, but the error is from the `phylophlan_setup_database`...

Hi, and thanks for reporting this. I believe the issue here is with the database parameter: ``` -d /home/geobig/Users/Liuli/phylophlan_databases/ ``` The `-d` param should take the db name and not...

Dear Davi, many thanks for reporting this. Can you please provide the PhyloPhlAn version you're using with: ~~~ phylophlan --version ~~~ And also if you can it would be helpful...