fanninpm

I was tracking down the source of a bug having to do with typeface preferences not getting transmitted to LilyPond. I came across #309, which seems to match up with...

Add option for `bracken-build` to invoke Kraken 2 with `--memory-mapping` flag

4

I tried to build a bracken `nt` database, but I ran into this error: ```none terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc ``` This was caused by...

Improved version of #60 that doesn't segfault and fail the tests.

"Suffolk" in `lat_longs.tsv` points to somewhere unexpected

1

### Current Behavior In the `lat_longs.tsv` file, Suffolk points to somewhere in Boston Harbor. ### Expected behavior "Suffolk" should point to somewhere in the East of England/East Anglia, not too...

[bug] Bactopia doesn't like uncompressed FASTQs from ONT

1

**Description** I was trying out Bactopia with some uncompressed FASTQs from ONT, when the run crashed during the gathering stage. It seems like Bactopia is assuming that ONT reads are...