cgalsimp2 command failed

[zhiweigong75]

Hi @fangq

I faced an issue using the meshresample.m with my Mac M1 chip (macOS Monterey 12.4).

Here is the error:

[fangq]

@zhiweigong75, unfortunately iso2mesh does not include any pre-compiled binaries for M1 processors. I expect that not only meshresample.m does not work, many other functions such as meshcheckrepair and s2m/surf2mesh also won't work.

you can, however, compile it yourself if you can set up the building environment. To compile these binaries, you need to run make inside the iso2mesh/tools folder

https://github.com/fangq/iso2mesh/tree/master/tools

you should also use git submodule update --init --remote to download all submodules under that folder. I anticipate setting up the compilation enviroment will take some time. currently, the included Makefile only works on Ubuntu Linux.

[mikami520]

@zhiweigong75, unfortunately iso2mesh does not include any pre-compiled binaries for M1 processors. I expect that not only meshresample.m does not work, many other functions such as meshcheckrepair and s2m/surf2mesh also won't work.

you can, however, compile it yourself if you can set up the building environment. To compile these binaries, you need to run make inside the iso2mesh/tools folder

https://github.com/fangq/iso2mesh/tree/master/tools

you should also use git submodule update --init --remote to download all submodules under that folder. I anticipate setting up the compilation enviroment will take some time. currently, the included Makefile only works on Ubuntu Linux.

@fangq Hi, I am the teammate of @zhiweigong75. I tried two ways to use iso2mesh.

1. I installed iso2mesh by MATLAB Add-Ons, when I called vol2surf, the MATLAB quit without reasons by just killing the process. Here is the error message:

sakuraxiao@ubuntu:~/Desktop/Statistical-Shape-Modeling/asm-master$ matlab
MATLAB is selecting SOFTWARE OPENGL rendering.
Killed

2. I followed the instruction to compile iso2mesh. when I called make clean, it gave me some errors and I had no idea to solve them. Here is the error message:

sakuraxiao@ubuntu:~/Desktop$ cd iso2mesh/
sakuraxiao@ubuntu:~/Desktop/iso2mesh$ rm -rf bin/*.mex* bin/*.exe
sakuraxiao@ubuntu:~/Desktop/iso2mesh$ cd tools
sakuraxiao@ubuntu:~/Desktop/iso2mesh/tools$ make clean
rm -rf  built #../bin
for i in cgalmesh cgalsimp2 cgalsurf cork meshfix meshfix/contrib/JMeshLib/test tetgen; do make --no-print-directory -C $i clean; done
make[1]: *** No rule to make target 'clean'.  Stop.
make[1]: *** No rule to make target 'clean'.  Stop.
make[1]: *** No rule to make target 'clean'.  Stop.
rm: cannot remove 'bin/off2obj': No such file or directory
Makefile:245: recipe for target 'clean' failed
make[1]: [clean] Error 1 (ignored)
rm: cannot remove 'lib/libcork.a': No such file or directory
Makefile:245: recipe for target 'clean' failed
make[1]: [clean] Error 1 (ignored)
rm: cannot remove 'lib/libcorkdebug.a': No such file or directory
Makefile:245: recipe for target 'clean' failed
make[1]: [clean] Error 1 (ignored)
make[1]: *** No rule to make target 'clean'.  Stop.
rm -f -f *.o jmeshlib
/bin/rm *.o *.a tetgen *~
/bin/rm: cannot remove '*.o': No such file or directory
/bin/rm: cannot remove '*.a': No such file or directory
/bin/rm: cannot remove 'tetgen': No such file or directory
/bin/rm: cannot remove '*~': No such file or directory
makefile:58: recipe for target 'clean' failed
make[1]: *** [clean] Error 1
commons/Makefile_common.mk:108: recipe for target 'clean' failed
make: *** [clean] Error 2

OS INFO

PyTorch version: N/A
Is debug build: N/A
CUDA used to build PyTorch: N/A
ROCM used to build PyTorch: N/A

OS: Ubuntu 18.04.6 LTS (x86_64)
GCC version: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0
Clang version: Could not collect
CMake version: version 3.10.2
Libc version: glibc-2.25

Python version: 3.6.9 (default, Mar 15 2022, 13:55:28)  [GCC 8.4.0] (64-bit runtime)
Python platform: Linux-5.4.0-122-generic-x86_64-with-Ubuntu-18.04-bionic
Is CUDA available: N/A
CUDA runtime version: Could not collect
GPU models and configuration: Could not collect
Nvidia driver version: Could not collect
cuDNN version: Could not collect
HIP runtime version: N/A
MIOpen runtime version: N/A
Is XNNPACK available: N/A

Versions of relevant libraries:
[pip3] No relevant packages
[conda] Could not collect

Do you have any ideas about these two installation methods? Thank you in advance!

[fangq]

@mikami520, if you run iso2mesh on Ubuntu Linux, you don't need to compile anything. the package should work out-of-box.

are you able to run the built-in examples in iso2mesh/sample folder?