Clinical-Trial-Parser

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We are getting below error while executing aact.sh. pg_restore: creating FK CONSTRAINT "ctgov.outcome_counts outcome_counts_result_group_id_fkey" pg_restore: creating FK CONSTRAINT "ctgov.outcome_measurements outcome_measurements_outcome_id_fkey" pg_restore: creating FK CONSTRAINT "ctgov.outcome_measurements outcome_measurements_result_group_id_fkey" pg_restore: creating FK CONSTRAINT...

harryOmics

I would like to get the clinical trials for a particular gene and variant inclusion criteria. Is there a way to get that using the clinical trial parser? If so,...

srinhari

ModuleNotFoundError: No module named 'caffe2'

2

when i execute this command:- (base) macbook@macbooks-MacBook-Pro Clinical-Trial-Parser-main % pytext train < src/resources/config/ner.json following is error which arrise despite i installed caffe and all other dependencies. moreover, also tried all...

naumanshah007

caffe2 missing?

1

I was wondering if anyone has had any luck installing/setting up the Clinical Trial Parser recently? I keep running into an error stating that caffe2 cannot be found when trying...

victormurcia

improve cfg_parse.sh result

2

is there a way to configure and improve cfg_parse result? At the moment with my test data set it is does not seem stable enough to parse a simple criteria...

mlaria

Training the NER on MacOS results in segfault

3

On MacOS Mojave and Catalina, training the NER models results in a segfault during the training of epoch 1. I'm using the command as advertised `pytext train < src/resources/config/ner.json`, from...

guneemwelloeux