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install error from source codes with anaconda

Open fengyicoder opened this issue 7 years ago • 7 comments

I try install the caffe2 from source codes ,so I use the command “conda build conda/cuda && conda install caffe2-cuda --use-local”. However, the error is as follows: [ 80%] Building CXX object caffe2/CMakeFiles/caffe2_gpu.dir/sgd/iter_op_gpu.cc.o make[2]: *** No rule to make target '/usr/local/cuda-9.0/lib64/libcudnn.so', needed by 'lib/libcaffe2_gpu.so'。 停止。 make[2]: *** 正在等待未完成的任务.... [ 80%] Building CXX object caffe2/CMakeFiles/caffe2_gpu.dir/sgd/learning_rate_op_gpu.cc.o CMakeFiles/Makefile2:3195: recipe for target 'caffe2/CMakeFiles/caffe2_gpu.dir/all' failed make[1]: *** [caffe2/CMakeFiles/caffe2_gpu.dir/all] Error 2 Makefile:138: recipe for target 'all' failed make: *** [all] Error 2 Traceback (most recent call last): File "/home/flyfree/anaconda2/bin/conda-build", line 11, in sys.exit(main()) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/cli/main_build.py", line 388, in main execute(sys.argv[1:]) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/cli/main_build.py", line 379, in execute verify=args.verify) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/api.py", line 185, in build need_source_download=need_source_download, config=config, variants=variants) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/build.py", line 1776, in build_tree notest=notest, File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/build.py", line 1122, in build utils.check_call_env(cmd, env=env, cwd=src_dir) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/utils.py", line 676, in check_call_env return _func_defaulting_env_to_os_environ(subprocess.check_call, *popenargs, **kwargs) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/utils.py", line 672, in _func_defaulting_env_to_os_environ return func(_args, **kwargs) File "/home/flyfree/anaconda2/lib/python2.7/subprocess.py", line 186, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['/bin/bash', '-e', '/home/flyfree/anaconda2/conda-bld/caffe2-cuda_1520914363644/work/conda_build.sh']' returned non-zero exit status 2

fengyicoder avatar Mar 13 '18 04:03 fengyicoder

Where are your CUDA and CuDNN installations? Can you post the cmake output, which should say where Caffe2 found CUDA and CuDNN during the build process?

pjh5 avatar Mar 13 '18 18:03 pjh5

@pjh5 I try to install the caffe2 again. but the new error appear is as follows: [ 78%] Building CXX object caffe2/CMakeFiles/caffe2_pybind11_state_gpu.dir/python/pybind_state.cc.o In file included from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/Python.h:8:0, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/detail/common.h:111, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pytypes.h:12, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/cast.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/attr.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pybind11.h:43, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.h:25, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:32, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.cc:17: /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/pyconfig.h:1190:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/x86_64-linux-gnu/c++/5/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/5/bits/c++config.h:482, from /usr/include/c++/5/utility:68, from /usr/include/c++/5/unordered_map:38, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:19, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.cc:17: /usr/include/features.h:228:0: note: this is the location of the previous definition

define _POSIX_C_SOURCE 200809L

^ In file included from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/Python.h:8:0, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/detail/common.h:111, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pytypes.h:12, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/cast.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/attr.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pybind11.h:43, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.h:25, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:32, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.cc:17: /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/pyconfig.h:1212:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 ^ In file included from /usr/include/x86_64-linux-gnu/c++/5/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/5/bits/c++config.h:482, from /usr/include/c++/5/utility:68, from /usr/include/c++/5/unordered_map:38, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:19, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.cc:17: /usr/include/features.h:169:0: note: this is the location of the previous definition

define _XOPEN_SOURCE 700

^ [ 78%] Linking CXX executable ../bin/context_test [ 78%] Linking CXX executable ../bin/smart_tensor_printer_test ../lib/libcaffe2.so：对‘leveldb::Status::ToStringabi:cxx11 const’未定义的引用 ../lib/libcaffe2.so：对‘google::SetUsageMessage(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)’未定义的引用 ../lib/libcaffe2.so：对‘leveldb::DB::Open(leveldb::Options const&, std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&, leveldb::DB**)’未定义的引用 ../lib/libcaffe2.so：对‘google::base::CheckOpMessageBuilder::NewStringabi:cxx11’未定义的引用 collect2: error: ld returned 1 exit status caffe2/CMakeFiles/context_test.dir/build.make:115: recipe for target 'bin/context_test' failed make[2]: *** [bin/context_test] Error 1 CMakeFiles/Makefile2:1440: recipe for target 'caffe2/CMakeFiles/context_test.dir/all' failed make[1]: *** [caffe2/CMakeFiles/context_test.dir/all] Error 2 make[1]: *** 正在等待未完成的任务.... [ 78%] Building CXX object caffe2/CMakeFiles/caffe2_pybind11_state_gpu.dir/python/pybind_state_dlpack.cc.o ../lib/libcaffe2.so：对‘leveldb::Status::ToStringabi:cxx11 const’未定义的引用 ../lib/libcaffe2.so：对‘google::SetUsageMessage(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)’未定义的引用 ../lib/libcaffe2.so：对‘leveldb::DB::Open(leveldb::Options const&, std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&, leveldb::DB**)’未定义的引用 ../lib/libcaffe2.so：对‘google::base::CheckOpMessageBuilder::NewStringabi:cxx11’未定义的引用 collect2: error: ld returned 1 exit status caffe2/CMakeFiles/smart_tensor_printer_test.dir/build.make:115: recipe for target 'bin/smart_tensor_printer_test' failed make[2]: *** [bin/smart_tensor_printer_test] Error 1 CMakeFiles/Makefile2:1356: recipe for target 'caffe2/CMakeFiles/smart_tensor_printer_test.dir/all' failed make[1]: *** [caffe2/CMakeFiles/smart_tensor_printer_test.dir/all] Error 2 [ 78%] Building CXX object caffe2/CMakeFiles/caffe2_pybind11_state_gpu.dir/python/pybind_state_mkl.cc.o In file included from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/Python.h:8:0, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/detail/common.h:111, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pytypes.h:12, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/cast.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/attr.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pybind11.h:43, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.h:25, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.cc:17: /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/pyconfig.h:1190:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/x86_64-linux-gnu/c++/5/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/5/bits/c++config.h:482, from /usr/include/c++/5/cstdlib:41, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/core/context.h:20, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.h:19, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.cc:17: /usr/include/features.h:228:0: note: this is the location of the previous definition

define _POSIX_C_SOURCE 200809L

^ In file included from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/Python.h:8:0, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/detail/common.h:111, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pytypes.h:12, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/cast.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/attr.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pybind11.h:43, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.h:25, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.cc:17: /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/pyconfig.h:1212:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 ^ In file included from /usr/include/x86_64-linux-gnu/c++/5/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/5/bits/c++config.h:482, from /usr/include/c++/5/cstdlib:41, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/core/context.h:20, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.h:19, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.cc:17: /usr/include/features.h:169:0: note: this is the location of the previous definition

define _XOPEN_SOURCE 700

^ In file included from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/Python.h:8:0, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/detail/common.h:111, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pytypes.h:12, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/cast.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/attr.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pybind11.h:43, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.h:25, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:32, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_mkl.cc:23: /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/pyconfig.h:1190:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/x86_64-linux-gnu/c++/5/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/5/bits/c++config.h:482, from /usr/include/c++/5/utility:68, from /usr/include/c++/5/unordered_map:38, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:19, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_mkl.cc:23: /usr/include/features.h:228:0: note: this is the location of the previous definition

define _POSIX_C_SOURCE 200809L

^ In file included from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/Python.h:8:0, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/detail/common.h:111, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pytypes.h:12, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/cast.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/attr.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pybind11.h:43, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.h:25, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:32, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_mkl.cc:23: /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/pyconfig.h:1212:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 ^ In file included from /usr/include/x86_64-linux-gnu/c++/5/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/5/bits/c++config.h:482, from /usr/include/c++/5/utility:68, from /usr/include/c++/5/unordered_map:38, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:19, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_mkl.cc:23: /usr/include/features.h:169:0: note: this is the location of the previous definition

define _XOPEN_SOURCE 700

^ [ 79%] Linking CXX executable ../bin/net_gpu_test ../lib/libcaffe2.so：对‘leveldb::Status::ToStringabi:cxx11 const’未定义的引用 ../lib/libcaffe2.so：对‘google::SetUsageMessage(std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&)’未定义的引用 ../lib/libcaffe2_gpu.so：对‘google::FlagRegisterer::FlagRegisterer<std::__cxx11::basic_string<char, std::char_traits, std::allocator > >(char const*, char const*, char const*, std::__cxx11::basic_string<char, std::char_traits, std::allocator >, std::__cxx11::basic_string<char, std::char_traits, std::allocator >)’未定义的引用 ../lib/libcaffe2.so：对‘leveldb::DB::Open(leveldb::Options const&, std::__cxx11::basic_string<char, std::char_traits, std::allocator > const&, leveldb::DB**)’未定义的引用 ../lib/libcaffe2_gpu.so：对‘google::base::CheckOpMessageBuilder::NewStringabi:cxx11’未定义的引用 collect2: error: ld returned 1 exit status caffe2/CMakeFiles/net_gpu_test.dir/build.make:115: recipe for target 'bin/net_gpu_test' failed make[2]: *** [bin/net_gpu_test] Error 1 CMakeFiles/Makefile2:1398: recipe for target 'caffe2/CMakeFiles/net_gpu_test.dir/all' failed make[1]: *** [caffe2/CMakeFiles/net_gpu_test.dir/all] Error 2 [ 79%] Building CXX object caffe2/CMakeFiles/caffe2_pybind11_state_gpu.dir/python/pybind_state_gpu.cc.o In file included from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/Python.h:8:0, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/detail/common.h:111, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pytypes.h:12, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/cast.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/attr.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pybind11.h:43, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.h:25, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:32, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_gpu.cc:24: /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/pyconfig.h:1190:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L ^ In file included from /usr/include/x86_64-linux-gnu/c++/5/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/5/bits/c++config.h:482, from /usr/include/c++/5/utility:68, from /usr/include/c++/5/unordered_map:38, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:19, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_gpu.cc:24: /usr/include/features.h:228:0: note: this is the location of the previous definition

define _POSIX_C_SOURCE 200809L

^ In file included from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/Python.h:8:0, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/detail/common.h:111, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pytypes.h:12, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/cast.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/attr.h:13, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/third_party/pybind11/include/pybind11/pybind11.h:43, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_dlpack.h:25, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:32, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_gpu.cc:24: /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/include/python2.7/pyconfig.h:1212:0: warning: "_XOPEN_SOURCE" redefined #define _XOPEN_SOURCE 600 ^ In file included from /usr/include/x86_64-linux-gnu/c++/5/bits/os_defines.h:39:0, from /usr/include/x86_64-linux-gnu/c++/5/bits/c++config.h:482, from /usr/include/c++/5/utility:68, from /usr/include/c++/5/unordered_map:38, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state.h:19, from /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/caffe2/python/pybind_state_gpu.cc:24: /usr/include/features.h:169:0: note: this is the location of the previous definition

define _XOPEN_SOURCE 700

^ cc1plus: warning: unrecognized command line option ‘-Wno-invalid-partial-specialization’ cc1plus: warning: unrecognized command line option ‘-Wno-invalid-partial-specialization’ cc1plus: warning: unrecognized command line option ‘-Wno-invalid-partial-specialization’ cc1plus: warning: unrecognized command line option ‘-Wno-invalid-partial-specialization’ [ 79%] Linking CXX shared module python/caffe2_pybind11_state_gpu.so [ 79%] Built target caffe2_pybind11_state_gpu Makefile:138: recipe for target 'all' failed make: *** [all] Error 2 Traceback (most recent call last): File "/home/flyfree/anaconda2/bin/conda-build", line 11, in sys.exit(main()) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/cli/main_build.py", line 388, in main execute(sys.argv[1:]) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/cli/main_build.py", line 379, in execute verify=args.verify) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/api.py", line 185, in build need_source_download=need_source_download, config=config, variants=variants) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/build.py", line 1776, in build_tree notest=notest, File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/build.py", line 1122, in build utils.check_call_env(cmd, env=env, cwd=src_dir) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/utils.py", line 676, in check_call_env return _func_defaulting_env_to_os_environ(subprocess.check_call, *popenargs, **kwargs) File "/home/flyfree/anaconda2/lib/python2.7/site-packages/conda_build/utils.py", line 672, in _func_defaulting_env_to_os_environ return func(_args, **kwargs) File "/home/flyfree/anaconda2/lib/python2.7/subprocess.py", line 186, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['/bin/bash', '-e', '/home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521114404271/work/conda_build.sh']' returned non-zero exit status 2

The location my cuda had installed is at 'usr/local'

fengyicoder avatar Mar 15 '18 12:03 fengyicoder

This is now #1980 . Have you pulled the latest code since yesterday? What is gcc --version?

pjh5 avatar Mar 15 '18 16:03 pjh5

@pjh5 Thanks! I try to uninstall the opencv and protobuf,and install them all with anaconda by the default channel again. The caffe2 works successfully.However,when I try to use detectron,the error appear in the "make ops" pocess,it displays as follows: ImportError: cannot import name caffe2_pb2

fengyicoder avatar Mar 17 '18 05:03 fengyicoder

What directory are you running the command from that makes that error? What is LD_LIBRARY_PATH and PYTHONPATH? Can you run find /home/flyfree/anaconda2 -name libcaffe2.so

pjh5 avatar Mar 18 '18 00:03 pjh5

@pjh5 I try to use the command 'mkdir -p build && cd build && cmake .. -DCUDA_ARCH_NAME=Kepler && make -j4',finally, the error changes. When I run the 'make ops', it presents as followings: mkdir -p build && cd build && cmake .. && make -j4 -- Caffe2: Found gflags with new-style gflags target. -- Caffe2: Cannot find glog automatically. Using legacy find. -- Caffe2: Found glog (include: /home/flyfree/anaconda2/include, library: /home/flyfree/anaconda2/lib/libglog.so) -- Caffe2: Found protobuf with old-style protobuf targets. -- Caffe2: Protobuf version -- Caffe2: CUDA detected: 9.0 -- Found cuDNN: v7.0.5 (include: /usr/local/cuda-9.0/include, library: /usr/local/cuda-9.0/lib64/libcudnn.so) -- Added CUDA NVCC flags for: sm_30 sm_35 -- CUDA detected: 9.0 -- Added CUDA NVCC flags for: sm_30 sm_35 -- Found libcuda: /usr/local/cuda-9.0/lib64/stubs/libcuda.so -- Found libnvrtc: /usr/local/cuda-9.0/lib64/libnvrtc.so -- Found cuDNN: v7.0.5 (include: /usr/local/cuda-9.0/include, library: /usr/local/cuda-9.0/lib64/libcudnn.so) -- Summary: -- CMake version : 3.5.1 -- CMake command : /usr/bin/cmake -- System name : Linux -- C++ compiler : /usr/bin/c++ -- C++ compiler version : 5.4.0 -- CXX flags : -std=c++11 -O2 -fPIC -Wno-narrowing -- Caffe2 version : 0.8.2 -- Caffe2 include path : /home/flyfree/anaconda2/include -- Have CUDA : TRUE -- CUDA version : 9.0 -- CuDNN version : 7.0.5 -- Configuring done -- Generating done -- Build files have been written to: /home/flyfree/detectron/lib/build make[1]: Entering directory '/home/flyfree/detectron/lib/build' make[2]: Entering directory '/home/flyfree/detectron/lib/build' make[3]: Entering directory '/home/flyfree/detectron/lib/build' make[3]: Entering directory '/home/flyfree/detectron/lib/build' [ 20%] Building NVCC (Device) object CMakeFiles/caffe2_detectron_custom_ops_gpu.dir/ops/caffe2_detectron_custom_ops_gpu_generated_zero_even_op.cu.o nvcc fatal : redefinition of argument 'std' CMake Error at caffe2_detectron_custom_ops_gpu_generated_zero_even_op.cu.o.cmake:203 (message): Error generating /home/flyfree/detectron/lib/build/CMakeFiles/caffe2_detectron_custom_ops_gpu.dir/ops/./caffe2_detectron_custom_ops_gpu_generated_zero_even_op.cu.o

CMakeFiles/caffe2_detectron_custom_ops_gpu.dir/build.make:63: recipe for target 'CMakeFiles/caffe2_detectron_custom_ops_gpu.dir/ops/caffe2_detectron_custom_ops_gpu_generated_zero_even_op.cu.o' failed make[3]: *** [CMakeFiles/caffe2_detectron_custom_ops_gpu.dir/ops/caffe2_detectron_custom_ops_gpu_generated_zero_even_op.cu.o] Error 1 make[3]: Leaving directory '/home/flyfree/detectron/lib/build' CMakeFiles/Makefile2:104: recipe for target 'CMakeFiles/caffe2_detectron_custom_ops_gpu.dir/all' failed make[2]: *** [CMakeFiles/caffe2_detectron_custom_ops_gpu.dir/all] Error 2 make[2]: *** 正在等待未完成的任务.... make[3]: Leaving directory '/home/flyfree/detectron/lib/build' [ 60%] Built target caffe2_detectron_custom_ops make[2]: Leaving directory '/home/flyfree/detectron/lib/build' Makefile:127: recipe for target 'all' failed make[1]: *** [all] Error 2 make[1]: Leaving directory '/home/flyfree/detectron/lib/build' Makefile:13: recipe for target 'ops' failed make: *** [ops] Error 2

  1. the path I run the command 'make ops' is ~/detectron/lib$.
  2. the information is as follows: export PATH="/home/freefly/anaconda2/bin:$PATH" export PATH="~/anaconda2/bin:$PATH" export PATH=/usr/local/cuda-9.0/bin${PATH:+:${PATH}} export LD_LIBRARY_PATH=/usr/local/cuda-9.0/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}} export LD_LIBRARY_PATH="/lib/x86_64-linux-gnu:$LD_LIBRARY_PATH" export PATH="~/anaconda2/conda-bld/caffe2-cuda_1520429019012/work/build:$PATH" export PATH="/home/flyfree/anaconda2/bin:$PATH"

3.After I run the command you said ,the result is as follows: /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521169513805/work/build/lib/libcaffe2.so /home/flyfree/anaconda2/conda-bld/caffe2-cuda_1521177360911/work/build/lib/libcaffe2.so /home/flyfree/anaconda2/pkgs/caffe2-cuda-0.8.dev-py27hae06318_0/lib/libcaffe2.so /home/flyfree/anaconda2/lib/libcaffe2.so

fengyicoder avatar Mar 18 '18 07:03 fengyicoder

/home/flyfree/anaconda2/bin is the same as ~/anaconda2/bin, so you are adding /home/flyfree/anaconda2/bin to your path three times; it should only be added once.

~/anaconda2/conda-bld/caffe2-cuda_1520429019012/work/build should definitely NOT be in your path. No folder under ~/anaconda2/conda-bld should ever be added to your PATH or LD_LIBRARY_PATH.

Can you run which nvcc and nvcc --version ?

Is this on Ubuntu?

pjh5 avatar Mar 19 '18 17:03 pjh5