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`ImportError` On clean installation in virtual enviroment

Open mattiasotgia opened this issue 2 years ago • 2 comments

Describe the bug Running

import exoplanet as xo

Trigger an ImportError with trace

ImportError: dlopen(./exoplanet/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39-darwin.so, 2): Library not loaded: @loader_path/libzip.5.5.dylib
  Referenced from: ./exoplanet/lib/python3.9/site-packages/netCDF4/.dylibs/libnetcdf.19.dylib
  Reason: no suitable image found.  Did find:
	./exoplanet/lib/python3.9/site-packages/netCDF4/.dylibs/libzip.5.5.dylib: cannot load 'libzip.5.5.dylib' (load command 0x80000034 is unknown)
	./exoplanet/lib/python3.9/site-packages/netCDF4/.dylibs/libzip.5.5.dylib: cannot load 'libzip.5.5.dylib' (load command 0x80000034 is unknown)

To Reproduce The only code run is

python3.9 -m venv exoplanets
python3.9 -m pip install -U "exoplanet[extras]"

and then

import exoplanet as xo

Expected behavior To import the package

Your setup (please complete the following information):

  • Version of exoplanet: latest (0.5.3)
  • Operating system: macOs (python venv)
  • Python version & installation method (pip, conda, etc.): python 3.9.12, installed throught pip

Additional context None

mattiasotgia avatar Jul 15 '23 14:07 mattiasotgia

This is an issue with the installation of netCDF4 (which is an indirect dependency via arviz), rather than exoplanet directly. I've also previously found that the pip binary wheel for mac is broken and fixed it by installing netCDF4 with conda (conda install -c conda-forge netcdf4), but there might be other ways to get an installation that works!

dfm avatar Jul 15 '23 14:07 dfm

Ok great news I'll try! Thanks for the quick reply and good work!

mattiasotgia avatar Jul 15 '23 14:07 mattiasotgia