Exomiser
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Add analysis strategies to docs
There are probably too many confusing example input files in the cli examples directory which leads to people rolling their own sub-optimal analysis steps.
Getting the best from Exomiser should be described in a new section of the documentation. This should include:
- How to choose the most informative HPO terms
- Strategies for analysis e.g. exomiser first followed by genomiser
- Examine the top 5 candidates
- Use the most recent version and data release
- How to analyse a trio or quad.
- Maybe some worked examples?
This article can be cited for choosing HPO terms -- https://pubmed.ncbi.nlm.nih.gov/31479590/