Create module.info for exomiser-core and exomiser-spring-boot-starter

[julesjacobsen]

Should be possible to create these as a Java modules.

https://github.com/spring-projects/spring-boot/issues/15810

note that the Spring Boot fat jar apps should not be modules (i.e. cli, web etc).

See also: https://github.com/spring-projects/spring-boot/wiki/Spring-Boot-with-Java-9-and-above

and: https://github.com/dsyer/spring-boot-java-10#jlink

Which explains/ shows that using jlink to create a runnable image isn't possible due to reliance on automatic modules, which jlink doesn't/can't support.

Otherwise this is a useful resource: https://medium.com/criciumadev/its-time-migrating-to-java-11-5eb3868354f9

[sheiy]

@damiansm there have a simple code https://github.com/sheiy/cmd-app-wrapper.git please help me to fix this;

[INFO] 
[INFO] ------------------< com.github.sheiy:cmd-app-wrapper >------------------
[INFO] Building cmd-app-wrapper 1.0.0
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- javafx-maven-plugin:0.0.3:jlink (default-cli) @ cmd-app-wrapper ---
Picked up JAVA_TOOL_OPTIONS: -Duser.language=en
Error: automatic module cannot be used with jlink: org.mapstruct.processor from file:///C:/Users/sheiy/.m2/repository/org/mapstruct/mapstruct-processor/1.3.0.Final/mapstruct-processor-1.3.0.Final.jar
[ERROR] Command execution failed.
org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1)
    at org.apache.commons.exec.DefaultExecutor.executeInternal (DefaultExecutor.java:404)
    at org.apache.commons.exec.DefaultExecutor.execute (DefaultExecutor.java:166)
    at org.openjfx.JavaFXBaseMojo.executeCommandLine (JavaFXBaseMojo.java:491)
    at org.openjfx.JavaFXBaseMojo.executeCommandLine (JavaFXBaseMojo.java:453)
    at org.openjfx.JavaFXJLinkMojo.execute (JavaFXJLinkMojo.java:183)
    at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:210)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:156)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:148)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81)
    at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56)
    at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
    at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
    at org.apache.maven.cli.MavenCli.execute (MavenCli.java:956)
    at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:288)
    at org.apache.maven.cli.MavenCli.main (MavenCli.java:192)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
    at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:566)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:282)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:225)
    at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:406)
    at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:347)
    at org.codehaus.classworlds.Launcher.main (Launcher.java:47)
org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1)
	at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404)
	at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166)
	at org.openjfx.JavaFXBaseMojo.executeCommandLine(JavaFXBaseMojo.java:491)
	at org.openjfx.JavaFXBaseMojo.executeCommandLine(JavaFXBaseMojo.java:453)
	at org.openjfx.JavaFXJLinkMojo.execute(JavaFXJLinkMojo.java:183)
	at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:137)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:210)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:156)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:148)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81)
	at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:56)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:305)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:192)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:105)
	at org.apache.maven.cli.MavenCli.execute(MavenCli.java:956)
	at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:288)
	at org.apache.maven.cli.MavenCli.main(MavenCli.java:192)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:282)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:225)
	at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:406)
	at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:347)
	at org.codehaus.classworlds.Launcher.main(Launcher.java:47)