When executing jupyter book on github pages. Error: No module named numpy

[atharvaaalok]

My myst.yml file is as follows:

version: 1
project:
  title: A title
  date: 2025/01/21
  jupyter: true
  github: repo_link
  authors:
    - name: Atharva Aalok
      email: [email protected]
      corresponding: true
      affiliations: Stanford University
      twitter: atharvaaalok
      github: atharvaaalok
  toc:
    - file: introduction.ipynb
    - file: the_idea_injective_net.ipynb
    - file: auxilliary_networks.ipynb
site:
  template: book-theme
  title: Geom

When I run the book on github pages, I get the error:

ModuleNotFoundError: No module named 'numpy'

How can I fix this? I will also eventually wish to run pytorch so it should be a solution that would work for that as well.

[agoose77]

There are many ways to execute code for a Jupyter Book. You can run your code cells at deploy time (in CI), or when the user interacts with the page (at read-time). You're asking about read-time.

I've made a PR to the repo I think you're referring to: https://github.com/atharvaaalok/neural_injective_geometry/pull/1

This PR sets up the machinery to do both, but does not actually execute the notebooks (I've commented out that flag)

To execute your notebooks at deploy time, you'll need to update your deploy environment to include these files.