Mirek Kratochvil

Hello, `printfile` seems like a nice convenience function to have to me. I know that it's kindof redundant, but it really simplifies the package use when you just want to...

implicit return lines reported active by coverage but not tracked in julia 1.10.2

7

Hello all, I found that "implicit return" lines that contain only a variables are counted into lines that "should be covered" by tests but the coverage testing doesn't work on...

## Target functionality Have the "minimum count of metabolites" growth media analysis. ## Suggestions for implementation This is veeeeeeeeery similar to what is happening at gapfilling. Having a function that...

Test all configurations and error reports that may be generated by readSBML and get_errors. Ref: https://github.com/LCSB-BioCore/SBML.jl/issues/243#issuecomment-1408915248_

Putting this here as a reminder also possible: - simplified removal of local parameters - simplified substitution of parameters and function definitions into kinetic laws

Models are downloaded from the corresponding repositories each time, which may be a problem for repositories not backed by CDNs (as with EBI) because random interruptions/failures there cause the failures...

## Target functionality This kind of code may look much better than what we have now: ```julia someCompartments = readSBML("myModel.xml") do m m.compartments end writeSBML("myModel.xml") do compartments=... species=... SBMLModel(comparmtents, species,...

missing C API for association expressions

6

Is there a C API for retrieving the structured gene association expression contents, in particular the tree of `FbcAnd`, `FbcOr` and `GeneProductRef` stuff that is held by `Association` (or `Association_t`...