Labrador
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ewels
A web based tool to manage and automate the processing of publicly available datasets.
Hi, I just came across the Labrador project first time. The approach to manage in house data and connect it to public databases is one of the currently most-demanded services...
Docker
Hi Phil! Thanks again for this incredible tool! The following is more a suggestion than an issue in itself. Have you ever think about creating a public Docker for this?...
The SRA changed how their API works, breaking both [sra-explorer](https://github.com/ewels/sra-explorer) and presumably also Labrador (x-ref https://github.com/ewels/sra-explorer/issues/24#issuecomment-692117704). Don't know what the fix is yet, but presumably at least some code will...
When adding datasets to `Usoskin_2015` project nothing gets uploaded. What I do is accessing the project, go to "Dataset" and click "Add datasets". I look up accession `GSE59739` and many...
@ewels I have uncovered an issue with the getSize function in files.php (ln 191). Its giving the following error for some files: `PHP Fatal error: Uncaught RuntimeException: SplFileInfo::getSize(): stat failed...
Hi @ewels, I've been struggling a bit with Labrador installation on a Docker. I'm still trying to figure it out. I'm almost there, but there's still two things for which...
All reports in the Overview Report section currently appear as Other HTML Reports independent of sample name and report type. It would be nice if this would work again.
The labrador code base is quite messy due to scope creep and organic growth. It could do with a bit of TLC, and some amputation to reduce complexity where features...
Datasets which are not being saved still throw an error if a required field is missing.
A nice way to add datasets would be to have a search function, then 'select all visible' checkbox.