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ESMProtein.from_pdb() ignores HETATOM

Open Ento0n opened this issue 2 months ago • 0 comments

Hi,

I'm currently working with your ESM3 model and create embeddings with pdb-files.

The problem is: ESMProtein.from_pdb() ignores HETATOMs, which are in my case essential (E.g. modified AAs, DAAs etc). Would be nice to have a flag or sth to include the HETATOMs in the processing.

Thanks in advance (:

Ento0n avatar Nov 05 '25 09:11 Ento0n