evolutionaryscale
Importing ESM2 and ESM3
For benchmarking purposes I would like to import both ESM2 and ESM3 but the problem is both have the same import name "esm" so I am unable to import ESM2. How should I go about importing both? "esm" does not encompass ESM2 and ESM3, both are still separate libraries right?
Yes beyond that I was wondering if there was a way of doing it without having to have separate ESM2 and ESM3 virtual environments? Specifically if there was plans to be able to import ESM2 models since they share the same import name
🙈 I can't think of a good way around this. We'll work on a solution. But in the mean time, you might just want to run something in root of this repo like
sed -i "s/esm./esm3./g" **/*.py
sed -i "s/esm/esm3/g" pyproject.toml
mv esm esm3
and then pip install . as a workaround?
hello developer, I want to know if I can use esm3's weight file in a esm2-based model. My teacher asked me to load esm3's weight in a previous model which uses pretrained esm2. I don't think it is plausible as they might have different model structures, right?
Moving esm2 from fair-esm to fair-esm2 might be feasible since the repository is now frozen.
Here's what I did to my fork (on my Mac with gsed):
* mv:dir
mv ./esm ./esm2
* mv:from-imports
gsed -i "s/from esm\./from esm2\./g" **/*.py
* mv:direct-imports
gsed -i "s/import esm$/import esm2/g" **/*.py
* mv:direct-imports:non-top-level
gsed -i "s/ import esm / import esm2 /g" **/*.py
* mv:setup.py
gsed -i "s/esm/esm2/g" setup.py
gsed -i "s/esm2fold/esmfold/g" setup.py
* mv:module-renames::[esm\.]->[/esm2\.]
gsed -i "s/esm\./esm2\./g" **/*.py
* mv:from-imports:2
gsed -i "s/from esm import /from esm2 import /g" **/*.py
* fix:readme
gsed -i "s/import esm$/import esm2/g" **/*.md
