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Published 20 hours ago • verified publisher icon evogytis

Add exports

Open batson opened this issue 4 years ago • 2 comments

Hello!

I believe you shared with me some code for exporting a baltic tree as a Nextstrain JSON. I expect it would be widely useful at this point.

exportJSON perhaps?

batson avatar Feb 12 '21 02:02 batson

Hey, Josh!

I've gotten clade padding working and will implement a rudimentary export to JSON soon and push everything to pip. For now feel free to use this workaround: https://github.com/evogytis/baltic/issues/20

Best, G.

evogytis avatar Feb 15 '21 18:02 evogytis

Hey Josh,

I've decided that exporting to auspice JSON is better done via a separate notebook rather than integrated into baltic itself because the automation of transfering all the traits from baltic into JSON might require more work than I can dedicate right now, as well as the meta portion of the JSON requiring a lot of customisation. Here's the notebook I prepared for the baltic gallery (it's not yet up on the website though): https://github.com/phylo-baltic/baltic-gallery/blob/gh-pages/assets/notebooks/advanced-auspice-export.ipynb Let me know if that addresses your need or if you run into any problems!

Best, G.

evogytis avatar Feb 24 '21 06:02 evogytis