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Scoring DNA with lineages

Open hmms117 opened this issue 10 months ago • 0 comments

Hi,

First of all, great work with Evo and for sharing the models.

Since you can prompt the model with lineages, I am wondering if it is possible to calculate scores or log likelihoods for a DNA sequence given a specific lineage? For example, would a prompt in the following style work?

|d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis | ATGA..<DNA>

Many thanks

hmms117 avatar Apr 22 '24 07:04 hmms117