Evan Cofer

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Results 58 comments of Evan Cofer

Table of contents for paper

@dhimmel Yes, I think it looks good. Maybe we can should look into updating the manubot used for building the paper. I agree with @AnneCarpenter that the expanded-by-default behavior would...

A New Dimension of Breast Cancer Epigenetics - Applications of Variational Autoencoders with DNA Methylation

Edited to put abstract in quotes.

Cardiologist-Level Arrhythmia Detection with Convolutional Neural Networks

This has been published: > Computerized electrocardiogram (ECG) interpretation plays a critical role in the clinical ECG workflow1. Widely available digital ECG data and the algorithmic paradigm of deep learning2...

Authors Since Publication

Good plan.

Understanding and Improving Interpolation in Autoencoders via an Adversarial Regularizer

This seems highly relevant to the [section on `latent space manipulation`](https://greenelab.github.io/deep-review/#latent-space-manipulation).

Section Status: Will deep learning transform the study of human disease?

I am siding with cutting this section because it does sound a little outdated. That being said, I think we should retain some sort of short judgement or summary of...

An unsupervised deep learning framework with variational autoencoders for genome-wide DNA methylation analysis and biologic feature extraction applied to breast cancer

Edited to put abstract in quotes.

Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

@renesugar Is there a paper for this? If so, can you please include the entire abstract and a doi-based link to the paper? I think [this issue](https://github.com/greenelab/deep-review/issues/941) is a good...

Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

I am wondering how we should standardize the formatting. @cgreene do we have some existing issue examples for non-publications? I do not recall any.

Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

@agitter That makes sense. @renesugar Could you add some sort of summary of each of the links you've included? The current one is informative for computer scientists, but it might...