evanbiederstedt

This is ready for review. * Checks for windows and mac os work for me, i.e. `devtools::check_win_devel()`, `devtools::check_win_release()`, `devtools::check_mac_release()`. Please try this out. * Example works for me; I can...

Roxygen2 documentation

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Hi @manzt This is my normal spiel below: It would be nice to get this on CRAN when the code is ready. The big impediment to this is always the...

Moved parameters to `nextflow.config`. Details of the code here: https://github.com/evanbiederstedt/clockwork/blob/feature/revise_NF_params/nextflow.config#L9-L16 Parameters I found here: https://github.com/evanbiederstedt/clockwork/blob/feature/revise_NF_params/nextflow.config#L18-L51 Note: It looks like all parameter names are the unique, except for `max_forks`: It's 20...

Adds Dockerfile to create the following docker image, `clockwork:0.1.0` Hosted here: https://hub.docker.com/r/evanbiederstedt/clockwork/tags It appears to work for me: ``` $ docker run -it evanbiederstedt/clockwork:0.1.0 /bin/bash root@22bb05250e82:/# which bwa /bin/bwa root@22bb05250e82:/#...

Possible permissions issue with $Bin; cat: tempread_*: No such file or directory

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Hi there I tried using Weaver with the following command: ``` Weaver PLOIDY -f SIMU.fa -S FINAL_SV -s SNP -g REGION -w X.bam.wig -r 1 -m map100mer.bd -p 64 solo_ploidy...

Hi Nam We were hoping to use ViFi, but it would be useful for organizational purposes if you could version the software. For example, this would be useful for the...

I noticed several URLs in the README were no longer functional, or outdated. This is my best guess for the current links---it might be best to have a closer look,...

Add informative errors to the R script

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One day, someone should at least add more informative errors to this script. The first step is a few `message()` statements which detail what part of the script is being...