UENO, M.

The lfortran logo does not appear on the Jupyter lab launcher page. I think it is because the logo image is not set, but how about setting it up like...

Method to capture receptor structure state after flexible docking

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Hi, I'm interested in capturing the exact state of the receptor after flexible docking. It seems there is no description about that on docs, but is there any way to...

Hi, @huhlim What is the difference between [v2](https://zenodo.org/records/5745217) and [v3](https://zenodo.org/records/7860658) uploaded to Zenodo? It seems that v3 has more mmCIFs than v2. Does this mean that v3 contains more recent...

Hi, @huhlim I can see different implementations of `remove_msa_for_template_aligned_regions` in `alphafold-multistate/structure_prediction/colabfold_runner.py` and `alphafold-multistate/structure_prediction/libaf.py` https://github.com/huhlim/alphafold-multistate/blob/main/structure_prediction/libaf.py#L27-L42 https://github.com/huhlim/alphafold-multistate/blob/main/structure_prediction/colabfold_runner.py#L142-L151 Why these functions are implemented differently despite the same function name? I know these functions...

Hi, @huhlim Thank you for your excellent work. I want to exclude annotated templates used for prediction that are highly similar to the query sequence. Does this method have any...

Adding the recipe for Waterkit v0.5.1. ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or updates...

Hi, Thank you for your excellent work. I plan to make pdbx be available with conda package becaue some of HHsuite scripts need this package installed. To do that license...

Added installation descriptions using conda package managers.

Update README.md

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Fixed incorrect markdown notation.

**Is your feature request related to a problem? Please describe.** I would like to be able to make the editor transparent because when I set a background image, I want...