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Mantaray manifest remove fork
Checklist
- [x] I have read the coding guide.
- [ ] My change requires a documentation update, and I have done it.
- [x] I have added tests to cover my changes.
- [x] I have filled out the description and linked the related issues.
Description
This PR fixes https://github.com/ethersphere/bee/issues/4808. Where loading a manifest then removing forks from it would not persist in the next load.