Hi,
I have installed ete3 using 'conda create -n phylogenetic -c etetoolkit ete3 ete_toolchain'. But I got a KeyError when I use 'ete3 build workflows genetree'. I want to solve this problem. Can you help me?
The error as follows.
Traceback (most recent call last):
File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/bin/ete3", line 33, in
sys.exit(load_entry_point('ete3==3.1.2', 'console_scripts', 'ete3')())
File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/ete3/tools/ete.py", line 95, in main
File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/ete3/tools/ete.py", line 147, in _main
File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/ete3/tools/ete_build.py", line 712, in _main
File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/ete3/tools/ete_build_lib/configcheck.py", line 194, in check_config
File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/ete3/tools/ete_build_lib/configobj.py", line 610, in getitem
KeyError: 'genetree_meta_workflow'
I found there is no file under '/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/'diretory.
I'm having this issue as well
I would like to provide a solution for this issue, try "pip install -I ete3". The PyPI repo seems to have the files missed from conda environment.