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conda install problem

Open yuanhelianyi opened this issue 4 years ago • 2 comments

Hi,

I have installed ete3 using 'conda create -n phylogenetic -c etetoolkit ete3 ete_toolchain'. But I got a KeyError when I use 'ete3 build workflows genetree'. I want to solve this problem. Can you help me?

The error as follows. Traceback (most recent call last): File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/bin/ete3", line 33, in sys.exit(load_entry_point('ete3==3.1.2', 'console_scripts', 'ete3')()) File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/ete3/tools/ete.py", line 95, in main File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/ete3/tools/ete.py", line 147, in _main File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/ete3/tools/ete_build.py", line 712, in _main File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/ete3/tools/ete_build_lib/configcheck.py", line 194, in check_config File "/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/ete3/tools/ete_build_lib/configobj.py", line 610, in getitem KeyError: 'genetree_meta_workflow'

I found there is no file under '/data2/zhaoJing/bin/miniconda3/envs/phylogenetic/lib/python3.6/site-packages/ete3-3.1.2-py3.7.egg/'diretory.

yuanhelianyi avatar Mar 08 '21 15:03 yuanhelianyi

I'm having this issue as well

mladen5000 avatar Jun 09 '21 20:06 mladen5000

I would like to provide a solution for this issue, try "pip install -I ete3". The PyPI repo seems to have the files missed from conda environment.

Runsheng avatar Nov 09 '21 08:11 Runsheng