cnvkit
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call, segmetrics: Filter by Bayesian mixture model
See the method in InferCNV: https://github.com/broadinstitute/inferCNV/wiki/Bayesian-Network-Latent-Mixture-Model
This method uses an existing R package, rjags, to perform MCMC simulations. Functions are here and the driver script is here.
Either wrap this method in segmetrics
and call
, or alternatively, ensure that the output of segmetrics
or export
(some format) can be used as input to inferCNV to continue filtering and plotting without reprocessing.