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relocation R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not be used

Open PeiyuQuan opened this issue 1 year ago • 9 comments

Hello I didn't make any modification, just uninstall asyn and re-install asyn. I got this error.

It is Ubuntu 22.04. Asyn is the latest version.

/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libtirpc.a(libtirpc_la-clnt_generic.o): warning: relocation against __rpc_minfd' in read-only section .text' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libtirpc.a(libtirpc_la-clnt_perror.o): relocation R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC

Part of installed result:

t -I../../asyn/devEpics -I../../asyn/asynRecord -I../../asyn/vxi11 -I../../asyn/drvPrologixGPIB -I../../asyn/gsIP488 -I../../asyn/ni1014 -I../../asyn/devGpib -I../../include/compiler/gcc -I../../include/os/Linux -I../../include -I/home/quan/epics/support/ipac/include -I/home/quan/epics/support/seq/include -I/home/quan/epics/support/calc/include -I/home/quan/epics/support/sscan/include -I/home/quan/epics/base/include/compiler/gcc -I/home/quan/epics/base/include/os/Linux -I/home/quan/epics/base/include -I/usr/include/tirpc -c ../../asyn/vxi11/TDS3000Reboot.c /usr/bin/gcc -D_GNU_SOURCE -D_DEFAULT_SOURCE -DUSE_TYPED_RSET -DUSE_TYPED_DSET -DUSE_TYPED_DRVET -DBUILDING_asyn_API -D_X86_64_ -DUNIX -Dlinux -O3 -g -Wall -Werror-implicit-function-declaration -DUSE_TYPED_RSET -DUSE_TYPED_DSET -DUSE_TYPED_DRVET -DHAVE_LSREC -DHAVE_CALCMOD -DHAVE_DEVINT64 -mtune=generic -m64 -fPIC -I. -I../O.Common -I. -I. -I../../asyn/drvAsynSerial/os/Linux -I../../asyn/drvAsynSerial/os/default -I.. -I../../asyn/asynDriver -I../../asyn/asynGpib -I../../asyn/drvAsynSerial -I../../asyn/interfaces -I../../asyn/miscellaneous -I../../asyn/asynPortDriver/exceptions -I../../asyn/asynPortDriver -I../../asyn/asynPortClient -I../../asyn/devEpics -I../../asyn/asynRecord -I../../asyn/vxi11 -I../../asyn/drvPrologixGPIB -I../../asyn/gsIP488 -I../../asyn/ni1014 -I../../asyn/devGpib -I../../include/compiler/gcc -I../../include/os/Linux -I../../include -I/home/quan/epics/support/ipac/include -I/home/quan/epics/support/seq/include -I/home/quan/epics/support/calc/include -I/home/quan/epics/support/sscan/include -I/home/quan/epics/base/include/compiler/gcc -I/home/quan/epics/base/include/os/Linux -I/home/quan/epics/base/include -I/usr/include/tirpc -c ../../asyn/drvPrologixGPIB/drvPrologixGPIB.c /usr/bin/gcc -D_GNU_SOURCE -D_DEFAULT_SOURCE -DUSE_TYPED_RSET -DUSE_TYPED_DSET -DUSE_TYPED_DRVET -DBUILDING_asyn_API -D_X86_64_ -DUNIX -Dlinux -O3 -g -Wall -Werror-implicit-function-declaration -DUSE_TYPED_RSET -DUSE_TYPED_DSET -DUSE_TYPED_DRVET -DHAVE_LSREC -DHAVE_CALCMOD -DHAVE_DEVINT64 -mtune=generic -m64 -fPIC -I. -I../O.Common -I. -I. -I../../asyn/drvAsynSerial/os/Linux -I../../asyn/drvAsynSerial/os/default -I.. -I../../asyn/asynDriver -I../../asyn/asynGpib -I../../asyn/drvAsynSerial -I../../asyn/interfaces -I../../asyn/miscellaneous -I../../asyn/asynPortDriver/exceptions -I../../asyn/asynPortDriver -I../../asyn/asynPortClient -I../../asyn/devEpics -I../../asyn/asynRecord -I../../asyn/vxi11 -I../../asyn/drvPrologixGPIB -I../../asyn/gsIP488 -I../../asyn/ni1014 -I../../asyn/devGpib -I../../include/compiler/gcc -I../../include/os/Linux -I../../include -I/home/quan/epics/support/ipac/include -I/home/quan/epics/support/seq/include -I/home/quan/epics/support/calc/include -I/home/quan/epics/support/sscan/include -I/home/quan/epics/base/include/compiler/gcc -I/home/quan/epics/base/include/os/Linux -I/home/quan/epics/base/include -I/usr/include/tirpc -c ../../asyn/devGpib/devCommonGpib.c /usr/bin/gcc -D_GNU_SOURCE -D_DEFAULT_SOURCE -DUSE_TYPED_RSET -DUSE_TYPED_DSET -DUSE_TYPED_DRVET -DBUILDING_asyn_API -D_X86_64_ -DUNIX -Dlinux -O3 -g -Wall -Werror-implicit-function-declaration -DUSE_TYPED_RSET -DUSE_TYPED_DSET -DUSE_TYPED_DRVET -DHAVE_LSREC -DHAVE_CALCMOD -DHAVE_DEVINT64 -mtune=generic -m64 -fPIC -I. -I../O.Common -I. -I. -I../../asyn/drvAsynSerial/os/Linux -I../../asyn/drvAsynSerial/os/default -I.. -I../../asyn/asynDriver -I../../asyn/asynGpib -I../../asyn/drvAsynSerial -I../../asyn/interfaces -I../../asyn/miscellaneous -I../../asyn/asynPortDriver/exceptions -I../../asyn/asynPortDriver -I../../asyn/asynPortClient -I../../asyn/devEpics -I../../asyn/asynRecord -I../../asyn/vxi11 -I../../asyn/drvPrologixGPIB -I../../asyn/gsIP488 -I../../asyn/ni1014 -I../../asyn/devGpib -I../../include/compiler/gcc -I../../include/os/Linux -I../../include -I/home/quan/epics/support/ipac/include -I/home/quan/epics/support/seq/include -I/home/quan/epics/support/calc/include -I/home/quan/epics/support/sscan/include -I/home/quan/epics/base/include/compiler/gcc -I/home/quan/epics/base/include/os/Linux -I/home/quan/epics/base/include -I/usr/include/tirpc -c ../../asyn/devGpib/devSupportGpib.c /usr/bin/gcc -D_GNU_SOURCE -D_DEFAULT_SOURCE -DUSE_TYPED_RSET -DUSE_TYPED_DSET -DUSE_TYPED_DRVET -DBUILDING_asyn_API -D_X86_64_ -DUNIX -Dlinux -O3 -g -Wall -Werror-implicit-function-declaration -DUSE_TYPED_RSET -DUSE_TYPED_DSET -DUSE_TYPED_DRVET -DHAVE_LSREC -DHAVE_CALCMOD -DHAVE_DEVINT64 -mtune=generic -m64 -fPIC -I. -I../O.Common -I. -I. -I../../asyn/drvAsynSerial/os/Linux -I../../asyn/drvAsynSerial/os/default -I.. -I../../asyn/asynDriver -I../../asyn/asynGpib -I../../asyn/drvAsynSerial -I../../asyn/interfaces -I../../asyn/miscellaneous -I../../asyn/asynPortDriver/exceptions -I../../asyn/asynPortDriver -I../../asyn/asynPortClient -I../../asyn/devEpics -I../../asyn/asynRecord -I../../asyn/vxi11 -I../../asyn/drvPrologixGPIB -I../../asyn/gsIP488 -I../../asyn/ni1014 -I../../asyn/devGpib -I../../include/compiler/gcc -I../../include/os/Linux -I../../include -I/home/quan/epics/support/ipac/include -I/home/quan/epics/support/seq/include -I/home/quan/epics/support/calc/include -I/home/quan/epics/support/sscan/include -I/home/quan/epics/base/include/compiler/gcc -I/home/quan/epics/base/include/os/Linux -I/home/quan/epics/base/include -I/usr/include/tirpc -c ../../asyn/devGpib/boSRQonOff.c /usr/bin/ar -rc libasyn.a asynManager.o epicsInterruptibleSyscall.o asynGpib.o drvAsynSerialPort.o drvAsynIPPort.o drvAsynIPServerPort.o asynInt32Base.o asynInt32SyncIO.o asynInt64Base.o asynInt64SyncIO.o asynInt8ArrayBase.o asynInt8ArraySyncIO.o asynInt16ArrayBase.o asynInt16ArraySyncIO.o asynInt32ArrayBase.o asynInt32ArraySyncIO.o asynInt64ArrayBase.o asynInt64ArraySyncIO.o asynUInt32DigitalBase.o asynUInt32DigitalSyncIO.o asynFloat64Base.o asynFloat64SyncIO.o asynFloat32ArrayBase.o asynFloat32ArraySyncIO.o asynFloat64ArrayBase.o asynFloat64ArraySyncIO.o asynOctetBase.o asynOctetSyncIO.o asynGenericPointerBase.o asynGenericPointerSyncIO.o asynEnumBase.o asynEnumSyncIO.o asynCommonSyncIO.o asynOptionSyncIO.o asynStandardInterfacesBase.o asynShellCommands.o asynInterposeCom.o asynInterposeEos.o asynInterposeFlush.o asynInterposeDelay.o asynInterposeEcho.o ParamListInvalidIndex.o ParamListParamNotFound.o ParamValNotDefined.o ParamValStringSizeRequestTooBig.o ParamValWrongType.o ParamValValueNotChanged.o paramVal.o asynPortDriver.o asynPortClient.o devAsynOctet.o asynEpicsUtils.o devAsynInt32.o devAsynInt32TimeSeries.o devAsynUInt32Digital.o devAsynFloat64.o devAsynXXXArray.o devAsynFloat64TimeSeries.o devEpicsPvt.o devAsynInt64TimeSeries.o devAsynInt64.o asynRecord.o drvAsyn.o vxi11core_xdr.o drvVxi11.o E5810Reboot.o E2050Reboot.o TDS3000Reboot.o drvPrologixGPIB.o devCommonGpib.o devSupportGpib.o boSRQonOff.o /usr/bin/ranlib libasyn.a /usr/bin/g++ -o libasyn.so -shared -fPIC -Wl,-hlibasyn.so -L/home/quan/epics/support/asyn/lib/linux-x86_64 -L/home/quan/epics/base/lib/linux-x86_64 -Wl,-rpath,/home/quan/epics/support/asyn/lib/linux-x86_64 -Wl,-rpath,/home/quan/epics/base/lib/linux-x86_64 -rdynamic -m64 asynManager.o epicsInterruptibleSyscall.o asynGpib.o drvAsynSerialPort.o drvAsynIPPort.o drvAsynIPServerPort.o asynInt32Base.o asynInt32SyncIO.o asynInt64Base.o asynInt64SyncIO.o asynInt8ArrayBase.o asynInt8ArraySyncIO.o asynInt16ArrayBase.o asynInt16ArraySyncIO.o asynInt32ArrayBase.o asynInt32ArraySyncIO.o asynInt64ArrayBase.o asynInt64ArraySyncIO.o asynUInt32DigitalBase.o asynUInt32DigitalSyncIO.o asynFloat64Base.o asynFloat64SyncIO.o asynFloat32ArrayBase.o asynFloat32ArraySyncIO.o asynFloat64ArrayBase.o asynFloat64ArraySyncIO.o asynOctetBase.o asynOctetSyncIO.o asynGenericPointerBase.o asynGenericPointerSyncIO.o asynEnumBase.o asynEnumSyncIO.o asynCommonSyncIO.o asynOptionSyncIO.o asynStandardInterfacesBase.o asynShellCommands.o asynInterposeCom.o asynInterposeEos.o asynInterposeFlush.o asynInterposeDelay.o asynInterposeEcho.o ParamListInvalidIndex.o ParamListParamNotFound.o ParamValNotDefined.o ParamValStringSizeRequestTooBig.o ParamValWrongType.o ParamValValueNotChanged.o paramVal.o asynPortDriver.o asynPortClient.o devAsynOctet.o asynEpicsUtils.o devAsynInt32.o devAsynInt32TimeSeries.o devAsynUInt32Digital.o devAsynFloat64.o devAsynXXXArray.o devAsynFloat64TimeSeries.o devEpicsPvt.o devAsynInt64TimeSeries.o devAsynInt64.o asynRecord.o drvAsyn.o vxi11core_xdr.o drvVxi11.o E5810Reboot.o E2050Reboot.o TDS3000Reboot.o drvPrologixGPIB.o devCommonGpib.o devSupportGpib.o boSRQonOff.o -ldbRecStd -ldbCore -lca -lCom -ltirpc -lpthread -lm -lrt -ldl -lgcc /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libtirpc.a(libtirpc_la-clnt_generic.o): warning: relocation against __rpc_minfd' in read-only section .text' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libtirpc.a(libtirpc_la-clnt_perror.o): relocation R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: bad value collect2: error: ld returned 1 exit status make[2]: *** [/home/quan/epics/base/configure/RULES_BUILD:316: libasyn.so] Error 1 make[2]: Leaving directory '/home/quan/epics/support/asyn/asyn/O.linux-x86_64' make[1]: *** [/home/quan/epics/base/configure/RULES_ARCHS:58: install.linux-x86_64] Error 2 make[1]: Leaving directory '/home/quan/epics/support/asyn/asyn' make: *** [/home/quan/epics/base/configure/RULES_DIRS:85: asyn.install] Error 2 quan@PC98545:~/epics/support/asyn$

PeiyuQuan avatar Jul 17 '24 00:07 PeiyuQuan

What package did you install for tirpc? You seem to have only libtirpc.a, not the needed .so file.

Mark

MarkRivers avatar Jul 17 '24 02:07 MarkRivers

Mark I installed tirpc two years ago. I forget what version it is. But it worked before until last week. It has libtirpc.a, but their path are different. Why the path is /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libtirpc.a during installing. quan@PC98545:~/epics/support/asyn$ apt-file find libtirpc.a libtirpc-dev: /usr/lib/x86_64-linux-gnu/libtirpc.a

/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libtirpc.a(libtirpc_la-clnt_generic.o): warning: relocation against __rpc_minfd' in read-only section .text' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libtirpc.a(libtirpc_la-clnt_perror.o): relocation R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC

PeiyuQuan avatar Jul 17 '24 22:07 PeiyuQuan

I’m on vacation. I can look at this tomorrow.

You need to see if libtirpc.so is present on your system. That is what you need.

Mark

Sent from my iPhone

On Jul 17, 2024, at 6:22 PM, Quan, Peiyu @.***> wrote:



Mark I installed tirpc two years ago. I forget what version it is. But it worked before until last week. It has libtirpc.a, but their path are different. Why the path is /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libtirpc.a during installing. @.***:~/epics/support/asyn$ apt-file find libtirpc.a libtirpc-dev: /usr/lib/x86_64-linux-gnu/libtirpc.a

/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libtirpc.a(libtirpc_la-clnt_generic.o): warning: relocation against __rpc_minfd' in read-only section .text' /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libtirpc.a(libtirpc_la-clnt_perror.o): relocation R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not be used when making a shared object; recompile with -fPIC

— Reply to this email directly, view it on GitHubhttps://github.com/epics-modules/asyn/issues/209#issuecomment-2234442584, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ABOVBTWG3NSAVRYJ6FSRBELZM3VC7AVCNFSM6AAAAABK7TIBPSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDEMZUGQ2DENJYGQ. You are receiving this because you commented.Message ID: @.***>

MarkRivers avatar Jul 18 '24 12:07 MarkRivers

Mark Yes. They are there, Have a safety trip, No Rush. quan@PC98545:~/epics/support/asyn$ apt-file find libtirpc.so libtirpc-dev: /usr/lib/x86_64-linux-gnu/libtirpc.so libtirpc3: /lib/x86_64-linux-gnu/libtirpc.so.3 libtirpc3: /lib/x86_64-linux-gnu/libtirpc.so.3.0.0

PeiyuQuan avatar Jul 18 '24 21:07 PeiyuQuan

What versions of these are you using:

  • asyn
  • EPICS base
  • Linux

On my RHEL9 system there is no libtirpc.a, just these .so files:

(base) [epics@corvette ~]$ find /usr -xdev -name 'libtirpc.so*'
/usr/lib64/libtirpc.so.3
/usr/lib64/libtirpc.so.3.0.0
/usr/lib64/libtirpc.so

(base) [epics@corvette ~]$ ls -l /usr/lib64/libtirpc*
lrwxrwxrwx. 1 root root     17 Mar 21 14:16 /usr/lib64/libtirpc.so -> libtirpc.so.3.0.0
lrwxrwxrwx. 1 root root     17 Mar 21 14:16 /usr/lib64/libtirpc.so.3 -> libtirpc.so.3.0.0
-rwxr-xr-x. 1 root root 196248 Mar 21 14:16 /usr/lib64/libtirpc.so.3.0.0

I suspect something else has changed on your system besides just uninstalling and re-installing asyn.

It seems like it is trying to link against libtirpc.a rather than libtirpc.so, but I am not sure.

MarkRivers avatar Jul 19 '24 19:07 MarkRivers

Mark

The Base is 7.07. Ubuntu 22.04.4 LTS, Asyn is the latest version I download it this week. I don't think it is EPICS issue, i think some documents in my PC is changed. I planed to re-install system. GLIBC is ldd (Ubuntu GLIBC 2.35-0ubuntu3.8) 2.35. But the error report show "stderr@@GLIBC_2.2.5' can not be used".

quan@PC98545:~$ sudo apt-file find libtirpc* [sudo] password for quan: libtirpc-dev: /usr/lib/x86_64-linux-gnu/libtirpc.so libtirpc3: /lib/x86_64-linux-gnu/libtirpc.so.3 libtirpc3: /lib/x86_64-linux-gnu/libtirpc.so.3.0.0

quan@PC98545:~/epics/support/asyn$ ls -l /lib/x86_64-linux-gnu/libtirpc* -rw-r--r-- 1 root root 404664 Jul 25 2022 /lib/x86_64-linux-gnu/libtirpc.a lrwxrwxrwx 1 root root 17 Jul 25 2022 /lib/x86_64-linux-gnu/libtirpc.so.3 -> libtirpc.so.3.0.0 -rw-r--r-- 1 root root 182912 Jul 25 2022 /lib/x86_64-linux-gnu/libtirpc.so.3.0.0

PeiyuQuan avatar Jul 19 '24 23:07 PeiyuQuan

Mark I thought I copied libtirpc.so last week and I have an incorrect operation. I can't remember clearly. I will try to fix it. Thank you Peiyu Quan

PeiyuQuan avatar Jul 19 '24 23:07 PeiyuQuan

GLIBC is ldd (Ubuntu GLIBC 2.35-0ubuntu3.8) 2.35. But the error report show "stderr@@GLIBC_2.2.5' can not be used".

That is normal, it is not a reason to re-install. My system is RHEL 9.4, gcc 11.4.1, GLIBC 2.34. This is what I see when I look at the GLIBC functions that libasyn.so is linked with:

(base) [epics@corvette linux-x86_64]$ nm libasyn.so  | grep GLIBC | grep -v GLIBCXX
                 U bind@GLIBC_2.2.5
                 U calloc@GLIBC_2.2.5
                 U cfsetispeed@GLIBC_2.2.5
                 U cfsetospeed@GLIBC_2.2.5
                 U close@GLIBC_2.2.5
                 U connect@GLIBC_2.2.5
                 U __ctype_b_loc@GLIBC_2.3
                 w __cxa_finalize@GLIBC_2.2.5
                 U __errno_location@GLIBC_2.2.5
                 U fclose@GLIBC_2.2.5
                 U fcntl@GLIBC_2.2.5
                 U fflush@GLIBC_2.2.5
                 U fopen@GLIBC_2.2.5
                 U fprintf@GLIBC_2.2.5
                 U fputc@GLIBC_2.2.5
                 U free@GLIBC_2.2.5
                 U getpeername@GLIBC_2.2.5
                 U getsockname@GLIBC_2.2.5
                 U ioctl@GLIBC_2.2.5
                 U __isoc99_sscanf@GLIBC_2.7
                 U listen@GLIBC_2.2.5
                 U malloc@GLIBC_2.2.5
                 U memchr@GLIBC_2.2.5
                 U memcmp@GLIBC_2.2.5
                 U memcpy@GLIBC_2.14
                 U memmove@GLIBC_2.2.5
                 U memset@GLIBC_2.2.5
                 U open@GLIBC_2.2.5
                 U poll@GLIBC_2.2.5
                 U printf@GLIBC_2.2.5
                 U puts@GLIBC_2.2.5
                 U read@GLIBC_2.2.5
                 U realloc@GLIBC_2.2.5
                 U recvfrom@GLIBC_2.2.5
                 U recv@GLIBC_2.2.5
                 U send@GLIBC_2.2.5
                 U sendto@GLIBC_2.2.5
                 U setsockopt@GLIBC_2.2.5
                 U shutdown@GLIBC_2.2.5
                 U sprintf@GLIBC_2.2.5
                 U stpcpy@GLIBC_2.2.5
                 U strchr@GLIBC_2.2.5
                 U strcmp@GLIBC_2.2.5
                 U strcpy@GLIBC_2.2.5
                 U strerror@GLIBC_2.2.5
                 U strlen@GLIBC_2.2.5
                 U strncmp@GLIBC_2.2.5
                 U strncpy@GLIBC_2.2.5
                 U strrchr@GLIBC_2.2.5
                 U strstr@GLIBC_2.2.5
                 U strtod@GLIBC_2.2.5
                 U strtol@GLIBC_2.2.5
                 U strtoul@GLIBC_2.2.5
                 U tcdrain@GLIBC_2.2.5
                 U tcflush@GLIBC_2.2.5
                 U tcsendbreak@GLIBC_2.2.5
                 U tcsetattr@GLIBC_2.2.5
                 U vfprintf@GLIBC_2.2.5
                 U write@GLIBC_2.2.5

Note that most of the functions are using the version from 2.2.5, but some use 2.3, 2.7, 2.14 etc.

I thought I copied libtirpc.so last week and I have an incorrect operation. I can't remember clearly. I will try to fix it.

You should never copy system libraries in an attempt to fix a problem you don't understand. It will just lead to total confusion.

MarkRivers avatar Jul 19 '24 23:07 MarkRivers

Hello Mark I lost my libtirpc.so. I have created a new one in /lib/x86_64-linux-gnu/. asyn driver has been installed. Thank you so much.

Peiyu

PeiyuQuan avatar Jul 20 '24 00:07 PeiyuQuan