Indigo

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**Background** [Issue on Ketchers side.](https://github.com/epam/ketcher/issues/7164) **Requirements** 1. On export to MOL-file nucleotide component should be saved as superatom S-groups with appropriate classes (sugar/base/phosphate) and structure (no other information). 1.1. On...

ljubica-milovic

[.NET] reset 'render-background-color' to transparent

1

**Background** We are using the renderer from a .Net application - works great. Currently we like to customize the renderer to let the user change various settings using a dialog....

rbri

Segfault while rebuilding index on molfile using bingo.molecule type

1

**Steps to Reproduce** 1. Use Indigo library (Bingo cartridge). Describe environment *Note: this issue is not 100% reproducible in our environment with a given set of data. It only seems...

amhuhn2

A little problem with MOl file to image conversion

1

I have a mol file, the coordinates of the lines in it are very large, several thousand, which causes the structured image I uplifted to be very large, is there...

PythonZhao

rendering ketcher json format in Indigo python

1

I am developing Moodle based cheminformatics plugins for classroom and examination purposes. Ketcher based structure editor is already integrated into Moodle html editor. I can export as image and render...

registerme1963

Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.2.2 to 2.5.0. Release notes Sourced from urllib3's releases. 2.5.0 🚀 urllib3 is fundraising for HTTP/2 support urllib3 is raising ~$40,000 USD to release HTTP/2 support and...

dependabot[bot]

[no ci] ## Generic request - [ ] PR name follows the pattern `#1234 – issue name` - [ ] branch name does not contain '#' - [ ] base...

AliaksandrDziarkach

Molecule Structure Is Different in Smart Layout Since Fix of Ketcher issues 486 and 487

2

**Environment details (please complete the following information):** - Indigo 1.14.0 - Win11_E **Describe the bug** I'm a C++ developer, we include "Indigo.dll" in our software to convert SMILES as molecule...

gdfsk2

How does one collapse certain groups on a molecule, such as CF3?

1

**Steps to Reproduce** 1. Use Indigo library version 1.18 in VB.Net environment, installed through NuGet; 2. Use a MolFile that contains a trifluoromethyl group such as TFA as indigo.loadMolecule(); 3....

saaring00

Marksuh search with bingo postgreSQL

1

**Steps to Reproduce** 1. PostgreSQL 15.4 Bingo 1.9.1.587-g0e3666ae7 2. `select * from structures where smiles@('C1C(*)=CC(*)=CC=1 |$;;X_p;;;Q_e;;$|', '')::bingo.sub` **Expected behavior** Fast request processing speed close to processing with `*` `(select *...

Vihuhol18