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pip install fails to build tvtk classes on Ubuntu-22.04 wsl2 instance
I've been trying to install mayavi on a fresh WSL2 instance for a while now, trying different versions of Ubuntu, Python, numpy, vtk, and installation methods, and had no success so far, and almost always get the same error when building wheel for mayavi. The weirdest thing is that a while back I managed to install it just fine in a WSL2 Ubuntu 22.04 instance, and copying the Python version, and pip installed package versions does not work on a fresh instance (I might have installed C libraries that I lost track of in that first instance).
For specificity, I will copy here the latest versions that I tried the installation process with (which try to replicate the setup in which it works), and the error obtained.
Distribution: Ubuntu 22.04.5 LTS (Jammy) Python: 3.10.12 numpy 1.26.4 PyQt5 5.15.11 vtk 9.4.0 (also tried with 9.3.1)
Another thing that might be relevant is that I'm using a venv and pip to install everything
Output of python -m pip install mayavi:
` Collecting mayavi Using cached mayavi-4.8.2.tar.gz (7.1 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Requirement already satisfied: packaging in ./venv3/lib/python3.10/site-packages (from mayavi) (24.2) Collecting envisage Using cached envisage-7.0.3-py3-none-any.whl (268 kB) Collecting apptools Using cached apptools-5.3.0-py3-none-any.whl (230 kB) Collecting traits>=6.0.0 Using cached traits-6.4.3-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.1 MB) Requirement already satisfied: vtk in ./venv3/lib/python3.10/site-packages (from mayavi) (9.3.1) Collecting pygments Using cached pygments-2.18.0-py3-none-any.whl (1.2 MB) Collecting traitsui>=7.0.0 Using cached traitsui-8.0.0-py3-none-any.whl (1.5 MB) Collecting pyface>=6.1.1 Using cached pyface-8.0.0-py3-none-any.whl (1.3 MB) Requirement already satisfied: numpy in ./venv3/lib/python3.10/site-packages (from mayavi) (1.26.4) Requirement already satisfied: setuptools in ./venv3/lib/python3.10/site-packages (from envisage->mayavi) (59.6.0) Requirement already satisfied: matplotlib>=2.0.0 in ./venv3/lib/python3.10/site-packages (from vtk->mayavi) (3.9.3) Requirement already satisfied: cycler>=0.10 in ./venv3/lib/python3.10/site-packages (from matplotlib>=2.0.0->vtk->mayavi) (0.12.1) Requirement already satisfied: fonttools>=4.22.0 in ./venv3/lib/python3.10/site-packages (from matplotlib>=2.0.0->vtk->mayavi) (4.55.1) Requirement already satisfied: kiwisolver>=1.3.1 in ./venv3/lib/python3.10/site-packages (from matplotlib>=2.0.0->vtk->mayavi) (1.4.7) Requirement already satisfied: contourpy>=1.0.1 in ./venv3/lib/python3.10/site-packages (from matplotlib>=2.0.0->vtk->mayavi) (1.3.1) Requirement already satisfied: pyparsing>=2.3.1 in ./venv3/lib/python3.10/site-packages (from matplotlib>=2.0.0->vtk->mayavi) (3.2.0) Requirement already satisfied: python-dateutil>=2.7 in ./venv3/lib/python3.10/site-packages (from matplotlib>=2.0.0->vtk->mayavi) (2.9.0.post0) Requirement already satisfied: pillow>=8 in ./venv3/lib/python3.10/site-packages (from matplotlib>=2.0.0->vtk->mayavi) (11.0.0) Requirement already satisfied: six>=1.5 in ./venv3/lib/python3.10/site-packages (from python-dateutil>=2.7->matplotlib>=2.0.0->vtk->mayavi) (1.16.0) Building wheels for collected packages: mayavi Building wheel for mayavi (pyproject.toml) ... error error: subprocess-exited-with-error
× Building wheel for mayavi (pyproject.toml) did not run successfully. │ exit code: -11 ╰─> [43 lines of output] running bdist_wheel running build running build_py Building tvtk_classes.zip ---------------------------------------------------------------------- Building TVTK classes... Fatal Python error: Segmentation fault
Current thread 0x00007f7a5c375000 (most recent call first):
File "/tmp/pip-install-xzt3ndlz/mayavi_6a5d15597cdb43c5a859897c017e3955/tvtk/vtk_parser.py", line 713 in _find_get_set_methods
File "/tmp/pip-install-xzt3ndlz/mayavi_6a5d15597cdb43c5a859897c017e3955/tvtk/vtk_parser.py", line 491 in _organize_methods
File "/tmp/pip-install-xzt3ndlz/mayavi_6a5d15597cdb43c5a859897c017e3955/tvtk/vtk_parser.py", line 157 in parse
File "/tmp/pip-install-xzt3ndlz/mayavi_6a5d15597cdb43c5a859897c017e3955/tvtk/wrapper_gen.py", line 337 in _gen_methods
File "/tmp/pip-install-xzt3ndlz/mayavi_6a5d15597cdb43c5a859897c017e3955/tvtk/wrapper_gen.py", line 238 in generate_code
File "/tmp/pip-install-xzt3ndlz/mayavi_6a5d15597cdb43c5a859897c017e3955/tvtk/code_gen.py", line 235 in _write_wrapper_class
File "/tmp/pip-install-xzt3ndlz/mayavi_6a5d15597cdb43c5a859897c017e3955/tvtk/code_gen.py", line 142 in generate_code
File "/tmp/pip-install-xzt3ndlz/mayavi_6a5d15597cdb43c5a859897c017e3955/tvtk/_setup.py", line 58 in gen_tvtk_classes_zip
File "<string>", line 247 in build_tvtk_classes_zip
File "<string>", line 254 in run
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 973 in run_command
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 995 in run_command
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 316 in run_command
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/build.py", line 135 in run
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 973 in run_command
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 995 in run_command
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 316 in run_command
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/command/bdist_wheel.py", line 381 in run
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 973 in run_command
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 995 in run_command
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 954 in run_commands
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 199 in run_commands
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 183 in setup
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/__init__.py", line 117 in setup
File "<string>", line 322 in <module>
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 320 in run_setup
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 522 in run_setup
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 407 in _build_with_temp_dir
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 426 in _build
File "/tmp/pip-build-env-d4zx3xp6/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 438 in build_wheel
File "/home/gdcs22/venv3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 261 in build_wheel
File "/home/gdcs22/venv3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345 in main
File "/home/gdcs22/venv3/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363 in <module>
Extension modules: numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg.lapack_lite, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, vtkmodules.vtkCommonCore, vtkmodules.vtkWebCore, vtkmodules.vtkCommonMath, vtkmodules.vtkCommonTransforms, vtkmodules.vtkParallelCore, vtkmodules.vtkCommonDataModel, vtkmodules.vtkCommonExecutionModel, vtkmodules.vtkIOCore, vtkmodules.vtkImagingCore, vtkmodules.vtkIOImage, vtkmodules.vtkIOXMLParser, vtkmodules.vtkIOXML, vtkmodules.vtkCommonMisc, vtkmodules.vtkFiltersCore, vtkmodules.vtkRenderingCore, vtkmodules.vtkRenderingContext2D, vtkmodules.vtkRenderingFreeType, vtkmodules.vtkRenderingSceneGraph, vtkmodules.vtkRenderingVtkJS, vtkmodules.vtkIOExport, vtkmodules.vtkWebGLExporter, vtkmodules.vtkInteractionStyle, vtkmodules.vtkFiltersGeneral, vtkmodules.vtkFiltersSources, vtkmodules.vtkInteractionWidgets, vtkmodules.vtkViewsCore, vtkmodules.vtkViewsInfovis, vtkmodules.vtkCommonComputationalGeometry, vtkmodules.vtkCommonSystem, vtkmodules.vtkFiltersCellGrid, vtkmodules.vtkIOCellGrid, vtkmodules.vtkIOLegacy, vtkmodules.vtkDomainsChemistry, vtkmodules.vtkRenderingHyperTreeGrid, vtkmodules.vtkRenderingUI, vtkmodules.vtkRenderingOpenGL2, vtkmodules.vtkRenderingContextOpenGL2, vtkmodules.vtkRenderingVolume, vtkmodules.vtkImagingMath, vtkmodules.vtkRenderingVolumeOpenGL2, vtkmodules.vtkViewsContext2D, vtkmodules.vtkImagingColor, vtkmodules.vtkTestingRendering, vtkmodules.vtkSerializationManager, vtkmodules.vtkRenderingVolumeAMR, vtkmodules.vtkPythonContext2D, vtkmodules.vtkRenderingParallel, vtkmodules.vtkRenderingVRModels, vtkmodules.vtkRenderingVR, vtkmodules.vtkRenderingMatplotlib, vtkmodules.vtkRenderingLabel, vtkmodules.vtkRenderingLOD, vtkmodules.vtkRenderingLICOpenGL2, vtkmodules.vtkRenderingImage, vtkmodules.vtkRenderingExternal, vtkmodules.vtkRenderingCellGrid, vtkmodules.vtkIOXdmf2, vtkmodules.vtkIOVeraOut, vtkmodules.vtkIOVPIC, vtkmodules.vtkIOTecplotTable, vtkmodules.vtkIOTRUCHAS, vtkmodules.vtkIOSegY, vtkmodules.vtkIOParallelXML, vtkmodules.vtkIOLSDyna, vtkmodules.vtkIOParallelLSDyna, vtkmodules.vtkIOExodus, vtkmodules.vtkIOParallelExodus, vtkmodules.vtkIOPLY, vtkmodules.vtkIOPIO, vtkmodules.vtkIOMovie, vtkmodules.vtkIOOggTheora, vtkmodules.vtkIOOMF, vtkmodules.vtkIONetCDF, vtkmodules.vtkIOMotionFX, vtkmodules.vtkIOGeometry, vtkmodules.vtkIOParallel, vtkmodules.vtkIOMINC, vtkmodules.vtkIOImport, vtkmodules.vtkIOIOSS, vtkmodules.vtkIOHDF, vtkmodules.vtkIOH5part, vtkmodules.vtkIOH5Rage, vtkmodules.vtkIOGeoJSON, vtkmodules.vtkIOFLUENTCFF, vtkmodules.vtkIOVideo, vtkmodules.vtkIOFDS, vtkmodules.vtkIOInfovis, vtkmodules.vtkIOExportPDF, vtkmodules.vtkRenderingGL2PSOpenGL2, vtkmodules.vtkIOExportGL2PS, vtkmodules.vtkIOEngys, vtkmodules.vtkIOEnSight, vtkmodules.vtkIOERF, vtkmodules.vtkIOCityGML, vtkmodules.vtkIOChemistry, vtkmodules.vtkIOCesium3DTiles, vtkmodules.vtkIOCONVERGECFD, vtkmodules.vtkIOCGNSReader, vtkmodules.vtkIOAsynchronous, vtkmodules.vtkIOAMR, vtkmodules.vtkInteractionImage, vtkmodules.vtkInfovisLayout, vtkmodules.vtkImagingStencil, vtkmodules.vtkImagingStatistics, vtkmodules.vtkImagingGeneral, vtkmodules.vtkImagingOpenGL2, vtkmodules.vtkImagingMorphological, vtkmodules.vtkImagingFourier, vtkmodules.vtkIOSQL, vtkmodules.vtkRenderingAnnotation, vtkmodules.vtkImagingHybrid, vtkmodules.vtkGeovisCore, vtkmodules.vtkFiltersTopology, vtkmodules.vtkFiltersTensor, vtkmodules.vtkFiltersSelection, vtkmodules.vtkFiltersSMP, vtkmodules.vtkFiltersPython, vtkmodules.vtkFiltersProgrammable, vtkmodules.vtkFiltersModeling, vtkmodules.vtkFiltersPoints, vtkmodules.vtkFiltersStatistics, vtkmodules.vtkFiltersParallelStatistics, vtkmodules.vtkFiltersImaging, vtkmodules.vtkFiltersExtraction, vtkmodules.vtkFiltersGeometry, vtkmodules.vtkFiltersHybrid, vtkmodules.vtkFiltersHyperTree, vtkmodules.vtkFiltersTexture, vtkmodules.vtkFiltersParallel, vtkmodules.vtkFiltersParallelImaging, vtkmodules.vtkFiltersParallelDIY2, vtkmodules.vtkFiltersTemporal, vtkmodules.vtkFiltersGeometryPreview, vtkmodules.vtkFiltersGeneric, vtkmodules.vtkFiltersFlowPaths, vtkmodules.vtkFiltersAMR, vtkmodules.vtkDomainsChemistryOpenGL2, vtkmodules.vtkCommonPython, vtkmodules.vtkChartsCore, vtkmodules.vtkCommonColor, vtkmodules.vtkImagingSources, vtkmodules.vtkInfovisCore, vtkmodules.vtkAcceleratorsVTKmCore, vtkmodules.vtkAcceleratorsVTKmDataModel, vtkmodules.vtkAcceleratorsVTKmFilters, vtkmodules.vtkFiltersVerdict, vtkmodules.vtkFiltersReduction (total: 161)
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for mayavi Failed to build mayavi ERROR: Could not build wheels for mayavi, which is required to install pyproject.toml-based projects `
If anyone could help me out find a solution even if it means changing distro, python or any installed package versions that would be great. I've been heavily relying on Mayavi to prototype solutions at work, and might just have to resort to another package if I cannot figure this out ):
Same here but on native(not wsl2) Ubuntu 22.04.03 LTS
` ollecting mayavi==4.8.2 (from -r /tmp/tmpnrtega50 (line 1)) Using cached https://nexus.abagy.com/repository/pip-mirror/packages/mayavi/4.8.2/mayavi-4.8.2.tar.gz (7.1 MB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: mayavi Building wheel for mayavi (pyproject.toml): started Building wheel for mayavi (pyproject.toml): finished with status 'error' Failed to build mayavi ( error: subprocess-exited-with-error
× Building wheel for mayavi (pyproject.toml) did not run successfully. │ exit code: -11 ╰─> [43 lines of output] running bdist_wheel running build running build_py Building tvtk_classes.zip ---------------------------------------------------------------------- Building TVTK classes... Fatal Python error: Segmentation fault
Current thread 0x00007f96a5a17000 (most recent call first):
File "/tmp/pip-wheel-86qrhjdx/mayavi_413c202a33c14ed28a6bfdda5e0a2668/tvtk/vtk_parser.py", line 713 in _find_get_set_methods
File "/tmp/pip-wheel-86qrhjdx/mayavi_413c202a33c14ed28a6bfdda5e0a2668/tvtk/vtk_parser.py", line 491 in _organize_methods
File "/tmp/pip-wheel-86qrhjdx/mayavi_413c202a33c14ed28a6bfdda5e0a2668/tvtk/vtk_parser.py", line 157 in parse
File "/tmp/pip-wheel-86qrhjdx/mayavi_413c202a33c14ed28a6bfdda5e0a2668/tvtk/wrapper_gen.py", line 337 in _gen_methods
File "/tmp/pip-wheel-86qrhjdx/mayavi_413c202a33c14ed28a6bfdda5e0a2668/tvtk/wrapper_gen.py", line 238 in generate_code
File "/tmp/pip-wheel-86qrhjdx/mayavi_413c202a33c14ed28a6bfdda5e0a2668/tvtk/code_gen.py", line 235 in _write_wrapper_class
File "/tmp/pip-wheel-86qrhjdx/mayavi_413c202a33c14ed28a6bfdda5e0a2668/tvtk/code_gen.py", line 142 in generate_code
File "/tmp/pip-wheel-86qrhjdx/mayavi_413c202a33c14ed28a6bfdda5e0a2668/tvtk/_setup.py", line 58 in gen_tvtk_classes_zip
File "<string>", line 247 in build_tvtk_classes_zip
File "<string>", line 254 in run
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/_distutils/dist.py", line 973 in run_command
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/dist.py", line 995 in run_command
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/_distutils/cmd.py", line 316 in run_command
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/_distutils/command/build.py", line 135 in run
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/_distutils/dist.py", line 973 in run_command
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/dist.py", line 995 in run_command
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/_distutils/cmd.py", line 316 in run_command
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/command/bdist_wheel.py", line 381 in run
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/_distutils/dist.py", line 973 in run_command
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/dist.py", line 995 in run_command
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/_distutils/dist.py", line 954 in run_commands
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/_distutils/core.py", line 199 in run_commands
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/_distutils/core.py", line 183 in setup
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/__init__.py", line 117 in setup
File "<string>", line 322 in <module>
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/build_meta.py", line 320 in run_setup
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/build_meta.py", line 522 in run_setup
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/build_meta.py", line 407 in _build_with_temp_dir
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/build_meta.py", line 426 in _build
File "/tmp/pip-build-env-bv21117o/overlay/local/lib/python3.10/dist-packages/setuptools/build_meta.py", line 438 in build_wheel
File "/bazel/cache/rwc/25a3c77a065e294bcbb59ec17782c259/external/pypi__pip/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251 in build_wheel
File "/bazel/cache/rwc/25a3c77a065e294bcbb59ec17782c259/external/pypi__pip/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335 in main
File "/bazel/cache/rwc/25a3c77a065e294bcbb59ec17782c259/external/pypi__pip/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353 in <module>
Extension modules: numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg.lapack_lite, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, vtkmodules.vtkCommonCore, vtkmodules.vtkWebCore, vtkmodules.vtkCommonMath, vtkmodules.vtkCommonTransforms, vtkmodules.vtkParallelCore, vtkmodules.vtkCommonDataModel, vtkmodules.vtkCommonExecutionModel, vtkmodules.vtkIOCore, vtkmodules.vtkImagingCore, vtkmodules.vtkIOImage, vtkmodules.vtkIOXMLParser, vtkmodules.vtkIOXML, vtkmodules.vtkCommonMisc, vtkmodules.vtkFiltersCore, vtkmodules.vtkRenderingCore, vtkmodules.vtkRenderingContext2D, vtkmodules.vtkRenderingFreeType, vtkmodules.vtkRenderingSceneGraph, vtkmodules.vtkRenderingVtkJS, vtkmodules.vtkIOExport, vtkmodules.vtkWebGLExporter, vtkmodules.vtkInteractionStyle, vtkmodules.vtkFiltersGeneral, vtkmodules.vtkFiltersSources, vtkmodules.vtkInteractionWidgets, vtkmodules.vtkViewsCore, vtkmodules.vtkViewsInfovis, vtkmodules.vtkCommonComputationalGeometry, vtkmodules.vtkCommonSystem, vtkmodules.vtkFiltersCellGrid, vtkmodules.vtkIOCellGrid, vtkmodules.vtkIOLegacy, vtkmodules.vtkDomainsChemistry, vtkmodules.vtkRenderingHyperTreeGrid, vtkmodules.vtkRenderingUI, vtkmodules.vtkRenderingOpenGL2, vtkmodules.vtkRenderingContextOpenGL2, vtkmodules.vtkRenderingVolume, vtkmodules.vtkImagingMath, vtkmodules.vtkRenderingVolumeOpenGL2, vtkmodules.vtkViewsContext2D, vtkmodules.vtkImagingColor, vtkmodules.vtkTestingRendering, vtkmodules.vtkSerializationManager, vtkmodules.vtkRenderingVolumeAMR, vtkmodules.vtkPythonContext2D, vtkmodules.vtkRenderingParallel, vtkmodules.vtkRenderingVRModels, vtkmodules.vtkRenderingVR, vtkmodules.vtkRenderingMatplotlib, vtkmodules.vtkRenderingLabel, vtkmodules.vtkRenderingLOD, vtkmodules.vtkRenderingLICOpenGL2, vtkmodules.vtkRenderingImage, vtkmodules.vtkRenderingExternal, vtkmodules.vtkRenderingCellGrid, vtkmodules.vtkIOXdmf2, vtkmodules.vtkIOVeraOut, vtkmodules.vtkIOVPIC, vtkmodules.vtkIOTecplotTable, vtkmodules.vtkIOTRUCHAS, vtkmodules.vtkIOSegY, vtkmodules.vtkIOParallelXML, vtkmodules.vtkIOLSDyna, vtkmodules.vtkIOParallelLSDyna, vtkmodules.vtkIOExodus, vtkmodules.vtkIOParallelExodus, vtkmodules.vtkIOPLY, vtkmodules.vtkIOPIO, vtkmodules.vtkIOMovie, vtkmodules.vtkIOOggTheora, vtkmodules.vtkIOOMF, vtkmodules.vtkIONetCDF, vtkmodules.vtkIOMotionFX, vtkmodules.vtkIOGeometry, vtkmodules.vtkIOParallel, vtkmodules.vtkIOMINC, vtkmodules.vtkIOImport, vtkmodules.vtkIOIOSS, vtkmodules.vtkIOHDF, vtkmodules.vtkIOH5part, vtkmodules.vtkIOH5Rage, vtkmodules.vtkIOGeoJSON, vtkmodules.vtkIOFLUENTCFF, vtkmodules.vtkIOVideo, vtkmodules.vtkIOFDS, vtkmodules.vtkIOInfovis, vtkmodules.vtkIOExportPDF, vtkmodules.vtkRenderingGL2PSOpenGL2, vtkmodules.vtkIOExportGL2PS, vtkmodules.vtkIOEngys, vtkmodules.vtkIOEnSight, vtkmodules.vtkIOERF, vtkmodules.vtkIOCityGML, vtkmodules.vtkIOChemistry, vtkmodules.vtkIOCesium3DTiles, vtkmodules.vtkIOCONVERGECFD, vtkmodules.vtkIOCGNSReader, vtkmodules.vtkIOAsynchronous, vtkmodules.vtkIOAMR, vtkmodules.vtkInteractionImage, vtkmodules.vtkInfovisLayout, vtkmodules.vtkImagingStencil, vtkmodules.vtkImagingStatistics, vtkmodules.vtkImagingGeneral, vtkmodules.vtkImagingOpenGL2, vtkmodules.vtkImagingMorphological, vtkmodules.vtkImagingFourier, vtkmodules.vtkIOSQL, vtkmodules.vtkRenderingAnnotation, vtkmodules.vtkImagingHybrid, vtkmodules.vtkGeovisCore, vtkmodules.vtkFiltersTopology, vtkmodules.vtkFiltersTensor, vtkmodules.vtkFiltersSelection, vtkmodules.vtkFiltersSMP, vtkmodules.vtkFiltersPython, vtkmodules.vtkFiltersProgrammable, vtkmodules.vtkFiltersModeling, vtkmodules.vtkFiltersPoints, vtkmodules.vtkFiltersStatistics, vtkmodules.vtkFiltersParallelStatistics, vtkmodules.vtkFiltersImaging, vtkmodules.vtkFiltersExtraction, vtkmodules.vtkFiltersGeometry, vtkmodules.vtkFiltersHybrid, vtkmodules.vtkFiltersHyperTree, vtkmodules.vtkFiltersTexture, vtkmodules.vtkFiltersParallel, vtkmodules.vtkFiltersParallelImaging, vtkmodules.vtkFiltersParallelDIY2, vtkmodules.vtkFiltersTemporal, vtkmodules.vtkFiltersGeometryPreview, vtkmodules.vtkFiltersGeneric, vtkmodules.vtkFiltersFlowPaths, vtkmodules.vtkFiltersAMR, vtkmodules.vtkDomainsChemistryOpenGL2, vtkmodules.vtkCommonPython, vtkmodules.vtkChartsCore, vtkmodules.vtkCommonColor, vtkmodules.vtkImagingSources, vtkmodules.vtkInfovisCore, vtkmodules.vtkAcceleratorsVTKmCore, vtkmodules.vtkAcceleratorsVTKmDataModel, vtkmodules.vtkAcceleratorsVTKmFilters, vtkmodules.vtkFiltersVerdict, vtkmodules.vtkFiltersReduction (total: 161)
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for mayavi
ERROR: Failed to build one or more wheels
Traceback (most recent call last):
File "/usr/lib/python3.10/runpy.py", line 196, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/usr/lib/python3.10/runpy.py", line 86, in _run_code
exec(code, run_globals)
File "/bazel/cache/rwc/25a3c77a065e294bcbb59ec17782c259/external/rules_python/python/pip_install/tools/wheel_installer/wheel_installer.py", line 200, in
Downgrading numpy and vtk works for me, first
pip install numpy==1.26.1 vtk==9.3.0
then
pip install mayavi --no-cache-dir --verbose --no-build-isolation
Downgrading numpy and vtk works for me, first
pip install numpy==1.26.1 vtk==9.3.0then
pip install mayavi --no-cache-dir --verbose --no-build-isolation
For me this seems to work if wheel is installed (running e.g. pip install wheel==0.45.1 before your commands).
Without wheel installed pip seems to try other mayavi versions as well, they all fail. You might need several verbose to see this
pip install mayavi --no-cache-dir --verbose --verbose --verbose --no-build-isolation
If wheel is not installed the installation of 4.8.2 using the command above fails with
error: invalid command 'bdist_wheel'
Preparing wheel metadata ... error
Downgrading numpy and vtk works for me, first首先降级 numpy 和 vtk 对我有用
pip install numpy==1.26.1 vtk==9.3.0then 然后
pip install mayavi --no-cache-dir --verbose --no-build-isolationFor me this seems to work if
wheelis installed (running e.g.pip install wheel==0.45.1before your commands).对我来说，如果安装了wheel（例如在命令之前运行pip install wheel==0.45.1），这似乎有效。Without wheel installed pip seems to try other mayavi versions as well, they all fail.如果没有安装wheel，pip似乎也尝试了其他mayavi版本，但它们都失败了。 You might need several verbose to see this您可能需要一些详细信息才能看到这一点
pip install mayavi --no-cache-dir --verbose --verbose --verbose --no-build-isolationThe installation of 4.8.2 fails with4.8.2 安装失败
error: invalid command 'bdist_wheel' Preparing wheel metadata ... error
not working for me😭
Wanted to add my voice as well to say that the workaround likewise didn't work for me. Even when pip installing wheel beforehand.
Can I assume that you used a clean environment or uninstalled vtk and numpy beforehand?
I have a local version that I have not touched that works but my issue arises when new builds run on readthedocs. I specified the numpy and vtk versions in requirements.txt and I likewise specify a wheel version under build-system in pyproject.toml. No dice unfortunately 😞
@GrowlingM1ke
Did you pip list the environment after the installation? Which versions of vtk, numpy and wheel were actually installed? The ones you were expecting?
@harrandt I have figured it out, it looks like readthedocs does install the correct versions of the packages.
Collecting vtk==9.3.0 (from -r requirements/requirements_basic.txt (line 8))
Downloading vtk-9.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.2 kB)
Collecting numpy==1.26.1 (from -r requirements/requirements_basic.txt (line 9))
Downloading numpy-1.26.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
But it seems to be using the wrong version wheel
created virtual environment CPython3.10.15.final.0-64 in 667ms
creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/calcium-transient-analysis/envs/latest, clear=False, no_vcs_ignore=False, global=False)
seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0
I've tested out locally with the correct version of wheel 0.45.1 and it worked for me so I think that is the culprit, however for the life of me I am unable to get readthedocs to use the correct wheel version. Specifying build-system in pyproject.toml seems to do nothing.
I tried to install it again later, and it's actually OK. That's what I did:
rebuilt a new conda environment first, and then
pip install wheel==0.45.1
then
pip install numpy==1.26.1 vtk==9.3.0
finally
pip install mayavi
It indeed works, thanks to harrandt!
Could you please try with the latest version which I will release this weekend on PyPI?
pip install https://github.com/enthought/mayavi/zipball/master
I tried to install it again later, and it's actually OK. That's what I did:我稍后尝试再次安装它，实际上没问题。我就是这样做的： rebuilt a new conda environment first, and then首先重建新的 Conda 环境，然后
pip install wheel==0.45.1``pip 安装 wheel==0.45.1then 然后pip install numpy==1.26.1 vtk==9.3.0finally 最后pip install mayaviIt indeed works, thanks to harrandt!多亏了 harrandt，它确实有效！
I did as you, but I get the following: Traceback (most recent call last): File "E:\miniconda\lib\site-packages\traits\trait_notifiers.py", line 342, in call self.handler(*args) File "E:\miniconda\lib\site-packages\mayavi\components\contour.py", line 204, in _contours_changed cf.update() File "tvtk_classes\algorithm.py", line 1076, in update ret = self._wrap_call(self._vtk_obj.update, *args) AttributeError: 'vtkmodules.vtkFiltersCore.vtkContourFilter' object has no attribute 'update' I don't know why.
@OCEANOUXIN
Was the correct environment active and did you try pip list in your environment to see if the desired packages are installed?
Could you please try with the latest version which I will release this weekend on PyPI?
pip install https://github.com/enthought/mayavi/zipball/master
Yes, this works for me, without any downgrade of VTK and numpy, thanks!
