Jesse Engreitz

Which cell type are you looking at? If K562 cells, chr9 KRnorm might not be available due to the BCR-ABL translocation, if I recall correctly On Fri, Feb 25, 2022...

please see supplemental methods of Fulco et al. Nat Genet 2019 On Fri, Feb 25, 2022 at 10:12 AM Ashvin Ravi ***@***.***> wrote: > Thank you for getting back to...

Hi David, Either of those two option (using one of the replicates, or merging them) would likely work fine, depending on the depth and reproducibility of the 3 replicate experiments...

Yes — Kristy, could you push this to the main branch? On Tuesday, May 24, 2022, Enrichetta ***@***.***> wrote: > Hi! > Do you have the collapsed Refseq TSS 500...

Hello, Yes, resources added here: https://github.com/broadinstitute/ABC-Enhancer-Gene-Prediction/tree/master/reference/hg38 Kristy On Tue, May 24, 2022 at 8:02 AM Jesse Engreitz ***@***.***> wrote: > Yes — Kristy, could you push this to the main...

I believe that the results from Fulco 2019 cannot be directly reproduced from the main branch of the code. I believe that Joe Nasser explained why in previous help thread...