endrebak.ada
endrebak.ada
The current `read_bed` is very strict. I'd like a method which reads any table where the three first columns are Chromosome, Start and End and the optional strand can be...
Can have exact same API as pandas. Should always return `Chromosome, Start, End` and optionally Strand. Add a flag `consecutive=False` which if True only merges adjacent rows with the groupby...
It seldom happens, but from now it should just stop.
It would be convenient to have a method which reports the distance to the nearest and previous interval, without necessarily knowing which interval that is. When looking at ranges I...
https://github.com/deeptools/pyGenomeTracks
I'd love an API to try to make a PyRanges automatically from a dataframe, without the user having to rename any columns. ``` gr = pr.from_dataframe(df) ``` But then we...
The multiline headers in bam/vcf files is often significant. How should it be preserved? Possibility: add a meta-dict to PyRanges where the header is stored after reading a file. Or...
https://github.com/endrebak/pyranges Still in pre-alpha.