ontologies icon indicating copy to clipboard operation
ontologies copied to clipboard

Not all terms have descriptions

Open egonw opened this issue 9 years ago • 4 comments

whereas our DoW insists on that they all have. This is what BioPortal reports vor 3.0:

CLASSES WITH NO DEFINITION: 3226

Note that a good part of this are the terms from the NPO for which we yet need to develop a tool to extract the description from the XMLLiteral.

egonw avatar Mar 03 '16 15:03 egonw

I counted the total number of defined terms with either of following annotation properties: ("definition" in different external ontologies)

http://www.geneontology.org/formats/oboInOwl#def http://purl.bioontology.org/ontology/npo#definition http://scai.fraunhofer.de/HuPSON#SCAIVPH_00000009 http://www.ebi.ac.uk/efo/definition http://purl.obolibrary.org/obo/IAO_0000115 http://purl.obolibrary.org/obo/UBPROP_0000001 http://purl.org/dc/elements/1.1/description http://www.geneontology.org/formats/oboInOwl#hasDefinition http://www.w3.org/2000/01/rdf-schema#isDefinedBy http://purl.obolibrary.org/obo/HP_0040005

JKChang2015 avatar Jan 27 '17 13:01 JKChang2015

OK, nice list! Indeed, not all are currently translated by Slimmer...

egonw avatar Jan 27 '17 13:01 egonw

List of un-defined terms un-defined terms.xlsx

In which:

Ontology No. of un-defined terms
CCONT 12
NCIT 37
NPO 438
ENM 262
BTO 11
CHEBI 70
ENVO 177
OAE 35
PATO 8
STATO 1
FIX 17
CHEMINF 129
BAO 173
EFO 705

JKChang2015 avatar Jan 27 '17 14:01 JKChang2015

List of un-defined terms: un-defined terms.xlsx

JKChang2015 avatar Feb 14 '17 15:02 JKChang2015