ontologies
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Not all terms have descriptions
whereas our DoW insists on that they all have. This is what BioPortal reports vor 3.0:
CLASSES WITH NO DEFINITION: 3226
Note that a good part of this are the terms from the NPO for which we yet need to develop a tool to extract the description from the XMLLiteral.
I counted the total number of defined terms with either of following annotation properties: ("definition" in different external ontologies)
http://www.geneontology.org/formats/oboInOwl#def http://purl.bioontology.org/ontology/npo#definition http://scai.fraunhofer.de/HuPSON#SCAIVPH_00000009 http://www.ebi.ac.uk/efo/definition http://purl.obolibrary.org/obo/IAO_0000115 http://purl.obolibrary.org/obo/UBPROP_0000001 http://purl.org/dc/elements/1.1/description http://www.geneontology.org/formats/oboInOwl#hasDefinition http://www.w3.org/2000/01/rdf-schema#isDefinedBy http://purl.obolibrary.org/obo/HP_0040005
OK, nice list! Indeed, not all are currently translated by Slimmer...
List of un-defined terms un-defined terms.xlsx
In which:
| Ontology | No. of un-defined terms |
|---|---|
| CCONT | 12 |
| NCIT | 37 |
| NPO | 438 |
| ENM | 262 |
| BTO | 11 |
| CHEBI | 70 |
| ENVO | 177 |
| OAE | 35 |
| PATO | 8 |
| STATO | 1 |
| FIX | 17 |
| CHEMINF | 129 |
| BAO | 173 |
| EFO | 705 |
List of un-defined terms: un-defined terms.xlsx