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tool support for reproducible science

Open monperrus opened this issue 5 years ago • 8 comments

post to this issue to share, subscribe to this issue or watch the repo (right-hand side) to receive pointers about reproducible science

monperrus avatar Dec 10 '19 14:12 monperrus

Making simulation results reproducible—Survey, guidelines, and examples based on Gradle and Docker https://peerj.com/articles/cs-240/

monperrus avatar Dec 10 '19 14:12 monperrus

An introduction to Docker for reproducible research https://arxiv.org/pdf/1410.0846

monperrus avatar Dec 10 '19 14:12 monperrus

Reprozip: Computational reproducibility with ease https://fchirigati.com/files/papers/reprozip-sigmod206.pdf

monperrus avatar Dec 10 '19 14:12 monperrus

PRUNE: A preserving run environment for reproducible scientific computing http://ccl.cse.nd.edu/research/papers/prune-escience-2016.pdf

monperrus avatar Dec 10 '19 14:12 monperrus

Reproducibility in Practice: Dataset of a Large-Scale Study of Jupyter Notebooks https://zenodo.org/record/2538877

monperrus avatar Dec 10 '19 14:12 monperrus

This seems to be exactly what we're doing at VIDA-NYU/reproducibility-news (RSS feed, Twitter @ReproFeed). Perhaps we should join forces?

remram44 avatar Dec 11 '19 19:12 remram44

Nice, thanks for reaching out. I love RSS feeds and I'll receive your updates. Since you commented here, you'll receive ours, and we can all cross-post what's relevant.

monperrus avatar Dec 11 '19 21:12 monperrus

containerit: Generating Dockerfiles for reproducible research with R https://www.theoj.org/joss-papers/joss.01603/10.21105.joss.01603.pdf

monperrus avatar Dec 12 '19 09:12 monperrus