Étienne Mollier
Étienne Mollier
Following header changes in gcc 13, hh-suite fails to build with the following errors: In file included from //src/a3m_compress.cpp:8: //src/a3m_compress.h:37:37: error: ‘uint16_t’ has not been declared 37 | void writeU16(std::ostream&...
As first identified in [Debian bug #1058334] affecting ete3, since introduction of Python 3.12, a number of tests are failing with errors looking like: AttributeError: 'Test_Coretype_ArrayTable' object has no attribute...
Since python3, the universal newline mode 'U' has no effects. Since python3.11, that mode is obsolete and its use raises: Command: scoary.py -g scoary/exampledata/Gene_presence_absence.csv -t scoary/exa mpledata/Tetracycline_resistance.csv -o Test1 --no-time...
Since introduction of nitime/_version.py through the move to pyproject.toml, the sphinx documentation configuration script does not seem to have followed. Use of the former variables are causing a variety of...
As seen on [Debian bug #1049666], running the "clean" target under certain circumstances may cause the rule to fail with: rm: cannot remove 'test-reads.fq.gz': No such file or directory This...
As first identified in [Debian bug #1066534], DALIGNER fails to build from source when compiled with -Werror=implicit-function-declaration. This change ensures the definition of vasprintf is appropriately loaded from the standard...
Per vasprintf(3) manual, the function needs _GNU_SOURCE definiton for proper declaration. As seen in [Debian bug #1066663], lack thereof causes build failures with -Werror=implicit-function-declaration. [Debian bug #1066663]: https://bugs.debian.org/1066663
Greetings, In version 1.78, Biopython removed the deprecated Bio.Alphabet module. This patch follows recommendations published on https://biopython.org/wiki/Alphabet to allow Kleborate to run with this Biopython version. The test suite would...
Greetings, With the recent introduction of Gcc 12 in Debian unstable, I noticed that _rocm-hipamd_ 5.0.0 failed to build from source when _hipcc_ was trying to refer to Gcc 12...