emmaivansson

I am trying to run bracken on paired end seq data of microbiome, and I am getting the 'Error: no reads found. Please check your Kraken report' despite the fact...

@mziegler12 thanks for your input! Unfortunately this doesn't help, I have tried fiddling with the `-l `option without success. There are quite a lot of (S) and some (S1) but...

> Did you try the `-l` flag for the highest classification level `'D'`? I know, i wrote this before, but maybe we can exclude that it has something to do...