Elize Ng

> Hi Elize, in a previous comment you mentioned the new pipeline to get the fastq consensus file. How did you do it? with bcftools? I will appreciate any ideas...

Hi @AliceIob Not sure if you have solved your issue. I am still in the testing phase of running psmc. I initially had the same issue as you where I...

Thanks @davidaray for the helpful instructions! In the example excel file you have provided, I note that you only use the first 2 columns of the text output which are...

> Hello, > > I also have the `.txt` files and I have been trying to find a way to plot these results using `ggplot`. As it has been said,...

Has this been implemented? I am interested in obtaining a subset of loci from some scaffolds (=CHR) and not others, and to include all regions within them. Is there a...

> Hi @elizeng > > I'm having the same problem. Did you fix yours? Cheers F Hi @francicco I managed to find vcfutils.pl in bcftools 1.1. Hope that helps!

I am unsure if the following message that was given is an indication of the dataset being too large for the program, or if it points towards another problem that...