Edward Evans

Overloaded methods across ancestor types are somtimes not detected

2

Hi, I think I've found a bug: Suppose we have the following interface structure: ``` ───────┬────────────────────────────────────────────────────────────────────── │ File: com/mystuff/DoStuffNoArgs.java ───────┼────────────────────────────────────────────────────────────────────── 1 │ package com.mystuff; 2 │ public interface DoStuffNoArgs {...

`tqdm` is a pretty cool progress bar python package [tqdm](https://github.com/tqdm/tqdm). Lets do it :).

Slicing `net.imagej.Dataset` returns an `IntervalView` which does not support dimension metadata

1

Here is a minimal example using the `test_timeseries.tif` sample data from the PyImageJ repo. ```python import imagej # initialize ImageJ ij = imagej.init() # load data dataset = ij.io().open("doc/sample-data/test_timeseries.tif") xarr...

ImageJ Ops threshold results do not work with `3D Object Counter`

1

While working on some workflows using the `3D Object Counter` I discovered a bug where 8-bit binary images created from ImageJ Ops (_i.e._ the output from a threshold op) and...

Deleting frames from a time series multi-channel stack throws exception in Fiji

1

# Issue When slicing a multi-channel time lapse tif stack using pyimagej, Fiji's default drag and drop file reader fails to open the file and throws an exception. # Reproducing...

Auto-dispose/cleanup PyImageJ when Python is shutting down

6

When PyImageJ is running and is suddenly terminated (_e.g._ interrupting an active GUI session with `Ctrl + C`) can sometimes result in a terminal session waiting for `JPype` Java threads...

Right now we've added a basic ImgLib2 RAI slicing that outputs an `IntervalView` but this looses axis metadata from ImgPlus/Dataset. We want to add a similar `JImplementationFor` for those rich...

Add callback mechanism for GUI mode

3

# Update Update I wanted to preserve the original text (below) for this PR as its relevant to the goals (_i.e._ create a better experience for macOS users). With the...

Make interactive mode work on macOS

4

Currently, macOS users are unable to use `interactive` mode with PyImageJ. See issue https://github.com/imagej/pyimagej/issues/23 for more details on getting the ImageJ GUI to work on macOS. Work on this issue...

An in progress PR (https://github.com/imagej/pyimagej/pull/283) that brings conversion support for index images to ROIs also has a jupyter notebook detailing how to use it. This notebook has a warning stating...