Xiangjie Li

> Hi! > > I was wondering if you are working on/thinking about upgrading the package to dependencies with Python 3.7 and higher versions of scanpy? Right now, your package...

Maybe due to the version of scanpy. Sometimes scanpy cannot exactly identify 1000 hvgs even you set n_hvg=1000.

Thank you, Javier. This is due to the version of scanpy, can can you try to use older version of scanpy (such as, scanpy). I will update our package in...

Hi. thanks. I am fixing it now and will upload the new version as soon as possible. Because desc is developed based on the older version of scanpy (

For the extreme situation, each row of q_ij only has one nonzero. The distribution between p_ij and q_ij are the same.

```r BatchKL=function(df,dimensionData=NULL,replicates=200,n_neighbors=100,n_cells=100,batch="BatchID"){ #entropy of batch mixing #replicates is the number of boostrap times #n_neighbors is the number of nearest neighbours of cell(from all batchs) #n_cells is the number of randomly...

Can you try scaling data within each batch and then feed the scaled data into desc?

Sorry for the inconvenience. The error seems to be the shape size mismatched. Could you provide the error in detail?