svim

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Hi, I'm trying to run svim with some ONT data I have by mapping to a reference genome (svim reads --cores 20 --nanopore my_sample /media/anthonybarley/extradrive1/mergedtigris.fastq.gz a_marmoratus_AspMarm2.0.fasta). However, I am getting...

ajbarley

Hi， i am using svim2.0.0 and encountered an err: [ERROR ] '

vegetableyu

Hi. I'm trying SV calling from nanopore data, however, I have a problem. svim version 2.0.0 ``` $ svim alignment ~/data input.bam hg38.fa \ --verbose \ --symbolic_alleles \ --insertion_sequences \...

makise58

I'm using SVIM on some ONT sequencing data and I'm curious why the score for this entry is 0. When I use the formula on the wiki it seems like...

avictorsen

creating an image from a dockerfile based on rocker/shiny:4.0.5 and using `RUN conda install -y -c bioconda svim` never ends the installation. conda was installed this way: ``` # download...

Noczio

pos of interspersed duplication

1

Hi all, got confused by the vcf annotation of duplication. The annotation of DUP:INT includes the start pos, end pos and SVLEN. I found that end-start is always equal to...

bakeronit