Multi-sample processing

[YahGao]

Hello.

We have generated several PacBio data. As I understand it, svim calls SV for each sample. Can it process multiple samples together? My current idea is to call SV sample by sample and then merge them with SURVIVOR or Jasmine.

Thanks

[jamesdalg]

SVIM does not do that(see limitations section), but if you have found success with a tool, let me know. I tried bcftools and SURVIVOR, but neither seems to work well thusfar.