makeDataReport() and makeCodebook() freeze RStudio when complete

[b1azk0]

Each time I run one of those command a pdf is generated as it should. But my R Studio is always freezed and I have to restart a session or kill it in order to continue my work.

I'm not sure what info should I provide here, so I'll do whatever I'm asked.

> sessionInfo()
R version 3.5.2 (2018-12-20)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Manjaro Linux

Matrix products: default
BLAS/LAPACK: /opt/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64_lin/libmkl_gf_lp64.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=pl_PL.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=pl_PL.UTF-8    LC_MESSAGES=en_US.UTF-8    LC_PAPER=pl_PL.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=pl_PL.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] compiler_3.5.2 tools_3.5.2    yaml_2.2.0  

[annennenne]

That sounds strange, thanks for notifying us of the problem. Which version of dataMaid are you using? Does the problem also occur if you choose html output?:

makeDataReport(testData, replace = TRUE, output = "html")

What if you use pdf output but don't render the file?:

makeDataReport(testData, replace = TRUE, output = "pdf", render = FALSE)

What if you use pdf output, render the file, but don't open it?

makeDataReport(testData, replace = TRUE, output = "pdf", openResult = FALSE)

[b1azk0]

Hi. makeDataReport(testData, replace = TRUE, output = "html") Works as intended.

Both:

makeDataReport(testData, replace = TRUE, output = "pdf", render = FALSE)
makeDataReport(testData, replace = TRUE, output = "pdf", openResult = FALSE)

Result in the same error. In fact that was what I used in the 1st place (but I checked makeDataReport(testData, replace = TRUE) freezes RStudio as well.

[annennenne]

Just to be sure, is it correct that with

makeDataReport(testData, replace = TRUE, output = "pdf", render = FALSE)

you do get a .Rmd-file produced which is complete and can be rendered?

And with

makeDataReport(testData, replace = TRUE, output = "pdf", openResult = FALSE)

you do get a pdf file?

[b1azk0]

Yes, i both cases I get the file (.Rmd and / or .pdf).

[b1azk0]

I just compiled a pdf out of .Rmd.

Pdf is OK and accessible but the R session in RStudio keeps working:

[annennenne]

Do you experience problems with rendering other rmarkdown files to pdf? E.g. the template rmarkdown file in RStudio? And if that one runs, does it also work if you add a line of LaTeX code to it, e.g., $\sum x_i$?