error processing vignette

[rlzijdeman]

Hi I tried to install the package using the instructions on github. The rrdflibs installed fine, but with the rrdf I get the following error message:

install_github("rrdf", "egonw", subdir="rrdf") Installing github repo rrdf/master from egonw Downloading master.zip from https://github.com/egonw/rrdf/archive/master.zip Installing package from /var/folders/8w/60f85kqd1271y8bz6_k46pdr0000gn/T//RtmpH7nQjK/master.zip arguments 'minimized' and 'invisible' are for Windows only Installing rrdf '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla CMD build
'/private/var/folders/8w/60f85kqd1271y8bz6_k46pdr0000gn/T/RtmpH7nQjK/devtools1735799aad53/rrdf-master/rrdf'
--no-manual --no-resave-data

• checking for file '/private/var/folders/8w/60f85kqd1271y8bz6_k46pdr0000gn/T/RtmpH7nQjK/devtools1735799aad53/rrdf-master/rrdf/DESCRIPTION' ... OK
• preparing 'rrdf':
• checking DESCRIPTION meta-information ... OK
• installing the package to build vignettes
• creating vignettes ... ERROR Loading required package: rJava Loading required package: rrdflibs

Error: processing vignette 'tutorial.Rnw' failed with diagnostics: chunk 2 Error in .jcall("com/github/egonw/rrdf/RJenaHelper", "Lcom/hp/hpl/jena/rdf/model/Model;", : RcallMethod: cannot determine object class Execution halted Error: Command failed (1)

Any idea here what could be causing this? Here's my sessionInfo():

sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] devtools_1.5 rJava_0.9-6

loaded via a namespace (and not attached): [1] digest_0.6.3 evaluate_0.4.3 httr_0.2 memoise_0.1 parallel_3.0.2 [6] RCurl_1.95-4.1 stringr_0.6.2 tools_3.0.2 whisker_0.3-2

Best wishes,

Richard

[egonw]

Dear Richard, I just had an email on the rrdf user mailing list related to this either. I will look for a way to resolve this!

[egonw]

What I will try is just to disable vignette creation upon install_github():

https://github.com/egonw/rrdf/issues/29

But I will try to fix your specific compile error too, which I do not seem to get.

[rlzijdeman]

ok, thanks for taking a look at it. Obvious reasons why I may get the error and you don't might be that I'm on mac and using R 3.x (rather than R2.x )

[rpietro]

Hi Egon, just checking to see whether you had a chance to look into this. I'm getting the same error. my sessionInfo():

R version 3.1.1 (2014-07-10) Platform: x86_64-apple-darwin13.1.0 (64-bit)

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] googleVis_0.5.5 meta_3.8-0 data.table_1.9.2 rrdf_2.0.4 [5] rrdflibs_1.3.3 rJava_0.9-6 devtools_1.6.1

loaded via a namespace (and not attached): [1] grid_3.1.1 httr_0.5 plyr_1.8.1 Rcpp_0.11.3 RCurl_1.95-4.3 [6] reshape2_1.4 RJSONIO_1.3-0 stringr_0.6.2 tcltk_3.1.1 tools_3.1.1