Egill Axfjord Fridgeirsson

Results 59 comments of Egill Axfjord Fridgeirsson

I have a solution which solves this issue on my computer and in the docker container with the reprex. It's increasing the stack size with the java option "-Xss3m" or...

Hi @malihamashkoor123, Can you tell more about your use case where you think Bayesian Optimization (BO) would help over grid search? This is something that me and @jreps have been...

I'm going to make a PR to move this function from the validation module to the package

Hi @dfalbel, No there shouldn't be any forking. There should be only one process running the model training. I did notice though that for the first deadlock that happened there...

I'm not sure where the jvm stuff is coming from. There are packages earlier in my pipeline using java, to connect to a database and fetch the data. I'm trying...

I just ran into this again now when running the affected code segment manually, now I'm sure there is no forking happening anywhere. I've attached the gdb backtrace in case...

Yes the code is public. The main training loop is in [this class](https://github.com/OHDSI/DeepPatientLevelPrediction/blob/main/R/Estimator-class.R#L104) which is instantiated and fit during hyperparameter tuning [here](https://github.com/OHDSI/DeepPatientLevelPrediction/blob/main/R/Estimator.R#L273). The issue has both happened with a [ResNet](https://github.com/OHDSI/DeepPatientLevelPrediction/blob/main/R/ResNet.R)...

Thanks for reporting. I have a draft PR were I'm going over and fixing the documentation. But it's been taking longer than expected. I will probably merge what I have...

If the goal is to identify issues in your design. Then I think it's in the wrong place currently. Currently while it runs before `runPlp` it doesn't affect it in...